Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2406
(709 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 74 2e-13
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 73 4e-13
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 66 6e-11
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 64 2e-10
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 62 7e-10
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 61 1e-09
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 61 1e-09
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 61 1e-09
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 61 1e-09
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 61 1e-09
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 58 2e-08
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 58 2e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 55 8e-08
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 54 2e-07
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 53 3e-07
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 53 3e-07
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 53 3e-07
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 52 1e-06
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 52 1e-06
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 51 2e-06
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 49 5e-06
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 42 6e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 40 0.003
BT003543-1|AAO39547.1| 1051|Drosophila melanogaster RE04975p pro... 29 4.7
AE014134-1870|AAN10750.1| 1047|Drosophila melanogaster CG31716-P... 29 4.7
AE014134-1869|AAN10749.1| 1051|Drosophila melanogaster CG31716-P... 29 4.7
AE014134-1868|AAN10748.1| 1051|Drosophila melanogaster CG31716-P... 29 4.7
AE014134-1867|AAN10747.1| 1051|Drosophila melanogaster CG31716-P... 29 4.7
AE014134-1866|AAF52937.2| 1051|Drosophila melanogaster CG31716-P... 29 4.7
AE014134-1865|AAF52936.2| 1051|Drosophila melanogaster CG31716-P... 29 4.7
BT023878-1|ABA81812.1| 1320|Drosophila melanogaster RE66325p pro... 29 6.2
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 29 6.2
AY051548-1|AAK92972.1| 741|Drosophila melanogaster GH19611p pro... 29 6.2
AE014134-3261|AAF53907.2| 1320|Drosophila melanogaster CG2478-PA... 29 6.2
AE014134-425|AAF51245.1| 235|Drosophila melanogaster CG3528-PA ... 29 6.2
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 74.1 bits (174), Expect = 2e-13
Identities = 68/216 (31%), Positives = 93/216 (43%), Gaps = 6/216 (2%)
Frame = +1
Query: 43 KLADDIRELLRAKNASIRAYDRYPTVDNRIRM--RALQRDVKSRIAEVRDARWSDFLERL 216
+L I LLR K + Y R T D R++ L + +A + A+ FL+ L
Sbjct: 99 QLPPSILALLRLKRRVRKEYAR--TGDPRMQQIHSRLANCLHKALARRKQAQIDTFLDNL 156
Query: 217 APSQRSYYRLARTLKSDTVVTMPP--LVGPSGRXXXXXXXXXXXXXXXTLQTQCTPSTQS 390
+ Y L R K P + PSG L+ + TP +
Sbjct: 157 GADASTNYSLWRITKRFKAQPTPKSAIKNPSG-GWCRTSLEKTEVFANNLEQRFTPYNYA 215
Query: 391 VDPVHIELVDSEVERRASLPPSNALPP--VTPMEVKDLIKHLRPRKAPGSDGISNRVIKL 564
E + +VE P +LPP VT EVK+LI L +KAPG D + NR I+L
Sbjct: 216 P-----ESLCRQVEEYLESPFQMSLPPSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRL 270
Query: 565 LPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 672
LP Q + L IFN+ + FP WK A +I IHK
Sbjct: 271 LPDQALQFLVLIFNSVLDVGYFPKAWKSASIIMIHK 306
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 72.9 bits (171), Expect = 4e-13
Identities = 68/216 (31%), Positives = 93/216 (43%), Gaps = 6/216 (2%)
Frame = +1
Query: 43 KLADDIRELLRAKNASIRAYDRYPTVDNRIRM--RALQRDVKSRIAEVRDARWSDFLERL 216
+L I LLR K + Y R T D R++ L + +A + A+ FL+ L
Sbjct: 297 QLPSSILALLRLKRRVRKEYAR--TGDPRMQQIHSRLANCLHKALARRKQAQIDTFLDNL 354
Query: 217 APSQRSYYRLARTLKSDTVVTMPP--LVGPSGRXXXXXXXXXXXXXXXTLQTQCTPSTQS 390
+ Y L R K P + PSG L+ + TP +
Sbjct: 355 GADASTNYSLWRITKRFKAQPTPKSAIKNPSG-GWCRTSLEKTEVFANNLEQRFTPYNYA 413
Query: 391 VDPVHIELVDSEVERRASLPPSNALP--PVTPMEVKDLIKHLRPRKAPGSDGISNRVIKL 564
E + +VE P +LP VT EVK+LI L +KAPG D + NR I+L
Sbjct: 414 P-----ESLCRQVEEYLESPFQMSLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRL 468
Query: 565 LPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 672
LP Q + LA IFN+ + FP WK A +I IHK
Sbjct: 469 LPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHK 504
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 65.7 bits (153), Expect = 6e-11
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Frame = +1
Query: 358 LQTQCTPSTQSVDPVHIELVDS-EVERRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGS 534
L+T+ T + + E +DS E + SLP + P+ E+ + IK L +K+PG
Sbjct: 402 LETRFTHFQFATTEQYQETLDSLETPLQMSLP----IKPIRVEEIVEAIKSLPLKKSPGI 457
Query: 535 DGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
D + N +K LPV+ I+ LA I+NA + FP WK A ++ IHKP
Sbjct: 458 DNVCNATLKALPVRAILYLALIYNAILRVQFFPKQWKMAAILMIHKP 504
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 63.7 bits (148), Expect = 2e-10
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 13/227 (5%)
Frame = +1
Query: 34 HRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLER 213
H L ++ LL K R + +++ +++A + +K I +R+ R ++ +E
Sbjct: 323 HTLALDENTSRLLEEKRILSRVFKATKNYEDKAKLKAAENRLKKAIKILRENRINEQVEG 382
Query: 214 LAPSQ----RSYYRLARTLKSDTVVTMP-PLVGPSGRXXXXXXXXXXXXXXXTLQTQCTP 378
+ S R ++L K P L G L+ + P
Sbjct: 383 IDTSNPDRMRKMWKLLDEGKRTNQPNFPLKLETQKGPKWTKTIKETTETFVSHLEGRFKP 442
Query: 379 STQSVDPVHIELV--------DSEVERRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGS 534
+ +V HI+ V +S + R +L + P+T E+ D IK+L+ KAPG
Sbjct: 443 NN-NVPDYHIDRVNTGLRIIKESMLTERHNLNKNPHNQPITLKELNDEIKNLKNSKAPGK 501
Query: 535 DGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
D I+N++IK LP + + L I+N+ + +P WK A V I KP
Sbjct: 502 DLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKP 548
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 62.1 bits (144), Expect = 7e-10
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 13/227 (5%)
Frame = +1
Query: 34 HRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLER 213
H L ++ LL K R + T +++ +++A + +K I +R+ R ++ +E
Sbjct: 335 HTLTLDENTSRLLEEKRIQSRIFKATRTNEDKTKLKAAENRLKKVIKILREKRINEQIEG 394
Query: 214 LAPSQ----RSYYRLARTLKSDTVVTMP-PLVGPSGRXXXXXXXXXXXXXXXTLQTQCTP 378
+ + R +RL K P L G L+ + P
Sbjct: 395 IDTNNPDRMRKIWRLLSEGKKMNQPNFPLKLETKKGPKWTKTIKETTEAFVSHLEGRFKP 454
Query: 379 STQSVDPVHIELV--------DSEVERRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGS 534
+ + V HI+ V +S + R +L + P+T E+ + IK+L+ KAPG
Sbjct: 455 N-KIVPDYHIDKVNTGLRIIKESMLTERHNLNKNPHNQPITLNELNEEIKNLKNSKAPGK 513
Query: 535 DGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
D I+N++IK LP + + L I+N+ + +P WK A V I KP
Sbjct: 514 DLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKMILKP 560
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 61.3 bits (142), Expect = 1e-09
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Frame = +1
Query: 34 HRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLER 213
H L ++ LL K R + T +++ +++A + +K + +R+ R + +E
Sbjct: 207 HTLTLDENTSRLLEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEG 266
Query: 214 LAPSQ----RSYYRLARTLKSDTVVTMP-PLVGPSGRXXXXXXXXXXXXXXXTLQTQCTP 378
+ R +RL K P L G L+ + P
Sbjct: 267 IDTKNPDRMRKMWRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKP 326
Query: 379 STQSVDPVHIELVDSEVE--------RRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGS 534
+ +V HI V+S + R + + P+T E+ D IK+L+ KAPG
Sbjct: 327 NN-NVPDYHINTVNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGK 385
Query: 535 DGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
D I+N++IK LP + + L I+N+ + +P WK A V I KP
Sbjct: 386 DLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKP 432
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 61.3 bits (142), Expect = 1e-09
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Frame = +1
Query: 34 HRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLER 213
H L ++ LL K R + T +++ +++A + +K + +R+ R + +E
Sbjct: 323 HTLTLDENTSRLLEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEG 382
Query: 214 LAPSQ----RSYYRLARTLKSDTVVTMP-PLVGPSGRXXXXXXXXXXXXXXXTLQTQCTP 378
+ R +RL K P L G L+ + P
Sbjct: 383 IDTKNPDRMRKMWRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKP 442
Query: 379 STQSVDPVHIELVDSEVE--------RRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGS 534
+ +V HI V+S + R + + P+T E+ D IK+L+ KAPG
Sbjct: 443 NN-NVPDYHINTVNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGK 501
Query: 535 DGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
D I+N++IK LP + + L I+N+ + +P WK A V I KP
Sbjct: 502 DLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKP 548
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 61.3 bits (142), Expect = 1e-09
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 12/226 (5%)
Frame = +1
Query: 34 HRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLER 213
H L ++ LL K R + T +++ +++A + +K + +R+ R + +E
Sbjct: 323 HTLTLDENTSRLLEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEG 382
Query: 214 LAPSQ----RSYYRLARTLKSDTVVTMP-PLVGPSGRXXXXXXXXXXXXXXXTLQTQCTP 378
+ R +RL K P L G L+ + P
Sbjct: 383 IDTKNPDRMRKMWRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKP 442
Query: 379 STQ----SVDPVHIEL---VDSEVERRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSD 537
+ ++PV+ L +S + R + + P+T E+ D IK+L+ KAPG D
Sbjct: 443 NNNVPDYHINPVNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGKD 502
Query: 538 GISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
I+N++IK LP + + L I+N+ + +P WK A V I KP
Sbjct: 503 LITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKP 548
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 61.3 bits (142), Expect = 1e-09
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Frame = +1
Query: 34 HRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLER 213
H L ++ LL K R + T +++ +++A + +K + +R+ R + +E
Sbjct: 285 HTLTLDENTSRLLEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEG 344
Query: 214 LAPSQ----RSYYRLARTLKSDTVVTMP-PLVGPSGRXXXXXXXXXXXXXXXTLQTQCTP 378
+ R +RL K P L G L+ + P
Sbjct: 345 IDTKNPDRMRKMWRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKP 404
Query: 379 STQSVDPVHIELVDSEVE--------RRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGS 534
+ +V HI V+S + R + + P+T E+ D IK+L+ KAPG
Sbjct: 405 NN-NVPDYHINTVNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGK 463
Query: 535 DGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
D I+N++IK LP + + L I+N+ + +P WK A V I KP
Sbjct: 464 DLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKP 510
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 61.3 bits (142), Expect = 1e-09
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Frame = +1
Query: 34 HRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLER 213
H L ++ LL K R + T +++ +++A + +K + +R+ R + +E
Sbjct: 323 HTLTLDENTSRLLEEKRILSRIFKATRTDEDKAKLKAAENRLKKAVKILREKRINKQIEG 382
Query: 214 LAPSQ----RSYYRLARTLKSDTVVTMP-PLVGPSGRXXXXXXXXXXXXXXXTLQTQCTP 378
+ R +RL K P L G L+ + P
Sbjct: 383 IDTKNPDRMRKMWRLLDEGKKTNQPNFPLKLETKRGPKWTKTIKETTEAFVSHLEGRFKP 442
Query: 379 STQSVDPVHIELVDSEVE--------RRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGS 534
+ +V HI V+S + R + + P+T E+ D IK+L+ KAPG
Sbjct: 443 NN-NVPDYHINTVNSGLRTIKESMLTERYDVNKNPCNQPITLKELNDEIKNLKNSKAPGK 501
Query: 535 DGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
D I+N++IK LP + + L I+N+ + +P WK A V I KP
Sbjct: 502 DLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKMILKP 548
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 57.6 bits (133), Expect = 2e-08
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 3/209 (1%)
Frame = +1
Query: 58 IRELLRAKNASIRAY--DRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLERLAPSQR 231
I EL + +N R + R+P + +R L ++ + +A+W++ L++L +
Sbjct: 325 ITELFKTRNIIQRQWFRSRHPLLKSRCDH--LNYIIRKELFIYNNAKWNNKLQKLDKCSK 382
Query: 232 SYYRLARTLKSDTVVTMPPLVGPSGRXXXXXXXXXXXXXXXTLQTQCTPSTQSVDPVHIE 411
++ + + +K + +P L L+ T S + + I+
Sbjct: 383 PFWNITKAIKKRKQI-VPCLSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNT--ID 439
Query: 412 LVDSEVERRASLPPSNA-LPPVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVM 588
V ++ A P + A + VT EV ++K L RK+PG DGI N +K LP I
Sbjct: 440 QVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINH 499
Query: 589 LASIFNAAMANCIFPAVWKEADVIGIHKP 675
+ +I N + FP WK A ++ I KP
Sbjct: 500 IVNIANHCLQAGYFPRDWKIAKIVPILKP 528
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 57.6 bits (133), Expect = 2e-08
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 3/209 (1%)
Frame = +1
Query: 58 IRELLRAKNASIRAY--DRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLERLAPSQR 231
I EL + +N R + R+P + +R L ++ + +A+W++ L++L +
Sbjct: 273 ITELFKTRNIIQRQWFRSRHPLLKSRCDH--LNYIIRKELFIYNNAKWNNKLQKLDKCSK 330
Query: 232 SYYRLARTLKSDTVVTMPPLVGPSGRXXXXXXXXXXXXXXXTLQTQCTPSTQSVDPVHIE 411
++ + + +K + +P L L+ T S + + I+
Sbjct: 331 PFWNITKAIKKRKQI-VPCLSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNT--ID 387
Query: 412 LVDSEVERRASLPPSNA-LPPVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVM 588
V ++ A P + A + VT EV ++K L RK+PG DGI N +K LP I
Sbjct: 388 QVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINH 447
Query: 589 LASIFNAAMANCIFPAVWKEADVIGIHKP 675
+ +I N + FP WK A ++ I KP
Sbjct: 448 IVNIANHCLQAGYFPRDWKIAKIVPILKP 476
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 55.2 bits (127), Expect = 8e-08
Identities = 29/89 (32%), Positives = 45/89 (50%)
Frame = +1
Query: 409 ELVDSEVERRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVM 588
++ +++ + +L + P P EV ++I KAPG D I N +K LP Q I+
Sbjct: 415 QVEETQDQLNQALQMDMPITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILY 474
Query: 589 LASIFNAAMANCIFPAVWKEADVIGIHKP 675
+ +FNA + FP WK + IHKP
Sbjct: 475 ITLVFNAIVRLQYFPYQWKLGIISMIHKP 503
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 54.0 bits (124), Expect = 2e-07
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +1
Query: 409 ELVDSEVERRASLPPSNA-----LPPVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPV 573
E V +E+++ SL S PVT E+ LI L +KAPG+D ++N+ I LP
Sbjct: 11 EFVRNELDKFKSLNASGESGNSNFKPVTLAELNGLINSLELKKAPGTDNLNNKTIINLPT 70
Query: 574 QLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
+ + L I+N + FP WK A + I KP
Sbjct: 71 KARIYLILIYNNILRTGHFPNKWKHASISMIPKP 104
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 53.2 bits (122), Expect = 3e-07
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +1
Query: 469 PVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 648
PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 649 ADVIGIHKP 675
A + I KP
Sbjct: 543 ASISMIPKP 551
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 53.2 bits (122), Expect = 3e-07
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +1
Query: 469 PVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 648
PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 649 ADVIGIHKP 675
A + I KP
Sbjct: 543 ASISMIPKP 551
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 53.2 bits (122), Expect = 3e-07
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +1
Query: 469 PVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 648
PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 649 ADVIGIHKP 675
A + I KP
Sbjct: 543 ASISMIPKP 551
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 51.6 bits (118), Expect = 1e-06
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 3/194 (1%)
Frame = +1
Query: 103 DRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLERLAPSQRSY--YRLARTLKSDTVV 276
+R P + +++ A +R + E ++++ S ++E+L+P+ Y +R R LK+
Sbjct: 317 NRSPITKHMLKI-ATRRLTNALKQEEKNSQRS-YIEQLSPTSTKYPLWRAHRNLKTPIAP 374
Query: 277 TMPPLVGPSGRXXXXXXXXXXXXXXXTLQTQCTPSTQSVDPVHIELVDSEVERRASLPPS 456
MP L PSG LQ P+ + + L+ A+L P
Sbjct: 375 IMP-LRSPSGTWFRSDEERASAFADH-LQNVFRPNPSTNTFILPPLI------AANLDPQ 426
Query: 457 NALPPVTPMEVKDLIKH-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFP 633
P E+ +IK L PRK+PG D I+ R++ LP I+ + +FNA FP
Sbjct: 427 EPFE-FRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFP 485
Query: 634 AVWKEADVIGIHKP 675
WK++ ++ I KP
Sbjct: 486 QKWKKSTIVMIPKP 499
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 51.6 bits (118), Expect = 1e-06
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 3/194 (1%)
Frame = +1
Query: 103 DRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLERLAPSQRSY--YRLARTLKSDTVV 276
+R P + +++ A +R + E ++++ S ++E+L+P+ Y +R R LK+
Sbjct: 317 NRSPITKHMLKI-ATRRLTNALKQEEKNSQRS-YIEQLSPTSTKYPLWRAHRNLKTPIAP 374
Query: 277 TMPPLVGPSGRXXXXXXXXXXXXXXXTLQTQCTPSTQSVDPVHIELVDSEVERRASLPPS 456
MP L PSG LQ P+ + + L+ A+L P
Sbjct: 375 IMP-LRSPSGTWFRSDEERACAFADH-LQNVFRPNPSTNTFILPPLI------AANLDPQ 426
Query: 457 NALPPVTPMEVKDLIKH-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFP 633
P E+ +IK L PRK+PG D I+ R++ LP I+ + +FNA FP
Sbjct: 427 EPFE-FRPCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFP 485
Query: 634 AVWKEADVIGIHKP 675
WK++ ++ I KP
Sbjct: 486 QKWKKSTIVMIPKP 499
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 50.8 bits (116), Expect = 2e-06
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +1
Query: 448 PPSNALPPVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCI 627
PP++ P +T EV + K +RP KAPG DGI ++K + F + + +
Sbjct: 394 PPASDFPCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGV 453
Query: 628 FPAVWKEADVI 660
FP WK+ ++
Sbjct: 454 FPKRWKKMKLV 464
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 49.2 bits (112), Expect = 5e-06
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 4/210 (1%)
Frame = +1
Query: 58 IRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWSDFLERLAPS---Q 228
I +L+ K R + + + +++ R + + + + D ++E+L P+ Q
Sbjct: 301 IEQLVHVKRRLRREWQSSRSPTAKQKLKVATRKLANALKQEEDDDQRRYIEQLTPTGTKQ 360
Query: 229 RSYYRLARTLKSDTVVTMPPLVGPSGRXXXXXXXXXXXXXXXTLQTQCTPSTQSVDPVHI 408
+S +R TL+ T +P + S LQ TP+ +
Sbjct: 361 KSLWRAHSTLRPPTETVLP--IKNSSGGWARSDEDRANTFAAHLQNVFTPNQATST---F 415
Query: 409 ELVDSEVERRASLPPSNALPPVTPMEVKDLIK-HLRPRKAPGSDGISNRVIKLLPVQLIV 585
L V R P P E+ +IK +L P+K+PG D I+ +I LP +
Sbjct: 416 ALPSYPVNRHQQHTPI----VFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVR 471
Query: 586 MLASIFNAAMANCIFPAVWKEADVIGIHKP 675
+ +FNA FP WK +I I KP
Sbjct: 472 YITKLFNAITKLGYFPQRWKMMKIIMIPKP 501
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 42.3 bits (95), Expect = 6e-04
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 430 ERRASLPPSNALPPVTPM-EVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFN 606
E A + +PP + EV + L+ R++PG DGI+ + K + + LAS+F+
Sbjct: 419 ESEAPTAIAEEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFS 478
Query: 607 AAMANCIFPAVWKEADVIGIHK 672
+ FPA WK V+ + K
Sbjct: 479 RCIRLGYFPAEWKCPRVVSLLK 500
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +1
Query: 475 TPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEAD 654
T +E+++ + + K+PG+D +S ++K L L L IFN + +P W+ A
Sbjct: 438 TLLEIENSVAKAKG-KSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAI 496
Query: 655 VIGIHKP 675
+I I KP
Sbjct: 497 IIPISKP 503
>BT003543-1|AAO39547.1| 1051|Drosophila melanogaster RE04975p protein.
Length = 1051
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 RRASLPPSNALPPVTPMEVKDL-IKHLRPRKAPGSDGISNRVIKLLPV 573
R+ S P N +PP P + +DL ++HL ++ S G +N+ ++LP+
Sbjct: 971 RQYSSFPQNQIPP-HPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPM 1017
>AE014134-1870|AAN10750.1| 1047|Drosophila melanogaster CG31716-PG,
isoform G protein.
Length = 1047
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 RRASLPPSNALPPVTPMEVKDL-IKHLRPRKAPGSDGISNRVIKLLPV 573
R+ S P N +PP P + +DL ++HL ++ S G +N+ ++LP+
Sbjct: 967 RQYSSFPQNQIPP-HPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPM 1013
>AE014134-1869|AAN10749.1| 1051|Drosophila melanogaster CG31716-PE,
isoform E protein.
Length = 1051
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 RRASLPPSNALPPVTPMEVKDL-IKHLRPRKAPGSDGISNRVIKLLPV 573
R+ S P N +PP P + +DL ++HL ++ S G +N+ ++LP+
Sbjct: 971 RQYSSFPQNQIPP-HPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPM 1017
>AE014134-1868|AAN10748.1| 1051|Drosophila melanogaster CG31716-PD,
isoform D protein.
Length = 1051
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 RRASLPPSNALPPVTPMEVKDL-IKHLRPRKAPGSDGISNRVIKLLPV 573
R+ S P N +PP P + +DL ++HL ++ S G +N+ ++LP+
Sbjct: 971 RQYSSFPQNQIPP-HPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPM 1017
>AE014134-1867|AAN10747.1| 1051|Drosophila melanogaster CG31716-PC,
isoform C protein.
Length = 1051
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 RRASLPPSNALPPVTPMEVKDL-IKHLRPRKAPGSDGISNRVIKLLPV 573
R+ S P N +PP P + +DL ++HL ++ S G +N+ ++LP+
Sbjct: 971 RQYSSFPQNQIPP-HPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPM 1017
>AE014134-1866|AAF52937.2| 1051|Drosophila melanogaster CG31716-PB,
isoform B protein.
Length = 1051
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 RRASLPPSNALPPVTPMEVKDL-IKHLRPRKAPGSDGISNRVIKLLPV 573
R+ S P N +PP P + +DL ++HL ++ S G +N+ ++LP+
Sbjct: 971 RQYSSFPQNQIPP-HPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPM 1017
>AE014134-1865|AAF52936.2| 1051|Drosophila melanogaster CG31716-PA,
isoform A protein.
Length = 1051
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 RRASLPPSNALPPVTPMEVKDL-IKHLRPRKAPGSDGISNRVIKLLPV 573
R+ S P N +PP P + +DL ++HL ++ S G +N+ ++LP+
Sbjct: 971 RQYSSFPQNQIPP-HPQQQQDLFLQHLAQQQNSQSGGFNNQAQQMLPM 1017
>BT023878-1|ABA81812.1| 1320|Drosophila melanogaster RE66325p
protein.
Length = 1320
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 427 VERRASLPPSNA--LPPVTPMEVKDLIKHLRPRK 522
+E +PP+N LP ++VKDL HLRP++
Sbjct: 619 LENGTVIPPANLTDLPYCIDLQVKDLPAHLRPQR 652
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 565 LPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKP 675
LP+ ++ + +FNA FP WK++ +I I KP
Sbjct: 5 LPMCAVMRICLLFNAITKIGYFPQKWKKSIIIMIPKP 41
>AY051548-1|AAK92972.1| 741|Drosophila melanogaster GH19611p
protein.
Length = 741
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 427 VERRASLPPSNA--LPPVTPMEVKDLIKHLRPRK 522
+E +PP+N LP ++VKDL HLRP++
Sbjct: 40 LENGTVIPPANLTDLPYCIDLQVKDLPAHLRPQR 73
>AE014134-3261|AAF53907.2| 1320|Drosophila melanogaster CG2478-PA
protein.
Length = 1320
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 427 VERRASLPPSNA--LPPVTPMEVKDLIKHLRPRK 522
+E +PP+N LP ++VKDL HLRP++
Sbjct: 619 LENGTVIPPANLTDLPYCIDLQVKDLPAHLRPQR 652
>AE014134-425|AAF51245.1| 235|Drosophila melanogaster CG3528-PA
protein.
Length = 235
Score = 29.1 bits (62), Expect = 6.2
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = -3
Query: 197 DHLASRTSAMRDFTSRCRARIRIRLSTVGYLS*ARIEAFLALRSSLISSANLKR*RKSSA 18
D+L ++ ++ F +R + + ++STV YL R + L + S L +L+ R ++
Sbjct: 77 DYLNNKDEVLQQFANREKKLLEKQISTVVYLV-MRSKKGLEISSFLDLEQSLRESRFENS 135
Query: 17 TTCFD 3
T+C D
Sbjct: 136 TSCVD 140
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,729,417
Number of Sequences: 53049
Number of extensions: 760790
Number of successful extensions: 1879
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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