Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2406
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 48 9e-06
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 41 0.001
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 41 0.001
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 36 0.028
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 29 2.5
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 7.5
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 7.5
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 7.5
M37234-1|AAA28120.1| 272|Caenorhabditis elegans myosin I protein. 28 7.5
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 27 9.9
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 9.9
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 27 9.9
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/69 (34%), Positives = 41/69 (59%)
Frame = +1
Query: 472 VTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 651
+T +E+ ++ + P A G DGI+ I+ LP+ LA ++N +++ I P WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387
Query: 652 DVIGIHKPR 678
+VI I KP+
Sbjct: 388 NVIMIPKPK 396
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +1
Query: 385 QSVDPVHIELVDSEVE--RRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSDGISNRVI 558
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575
Query: 559 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 672
K +I ++ FN + + P WK + I K
Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFK 613
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +1
Query: 385 QSVDPVHIELVDSEVE--RRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSDGISNRVI 558
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314
Query: 559 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 672
K +I ++ FN + + P WK + I K
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFK 352
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 35.9 bits (79), Expect = 0.028
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +1
Query: 385 QSVDPVHIELVDSEVE--RRASLPPSNALPPVTPMEVKDLIKHLRPRKAPGSDGISNRVI 558
Q ++ + E S V + +S+P + PP P +++ ++ KA G D IS +
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404
Query: 559 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHK 672
K +I ++ FN + + P WK + I K
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFK 442
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 448 PPSNA--LPPVTPMEVKDLIKHLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMAN 621
PP A LPP E++ I KA GSD I+ +K +I ++ FN + +
Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445
Query: 622 CIFPAVWKEADVIGIHK 672
P WK + I K
Sbjct: 446 GNIPKDWKTSKTTLIFK 462
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 19 AEDFLHRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWS 198
+ED HR + +D ++ L + A +++ + N + A++R V++ + R+
Sbjct: 1692 SEDLAHRIEASDKHKKQLEIEQAELKS-SNTELIGNNAALSAMKRKVENEVQIARN-ELD 1749
Query: 199 DFLERLAPSQ 228
++L L S+
Sbjct: 1750 EYLNELKASE 1759
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 19 AEDFLHRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWS 198
+ED HR + +D ++ L + A +++ + N + A++R V++ + R+
Sbjct: 1692 SEDLAHRIEASDKHKKQLEIEQAELKS-SNTELIGNNAALSAMKRKVENEVQIARN-ELD 1749
Query: 199 DFLERLAPSQ 228
++L L S+
Sbjct: 1750 EYLNELKASE 1759
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 19 AEDFLHRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWS 198
+ED HR + +D ++ L + A +++ + N + A++R V++ + R+
Sbjct: 1692 SEDLAHRIEASDKHKKQLEIEQAELKS-SNTELIGNNAALSAMKRKVENEVQIARN-ELD 1749
Query: 199 DFLERLAPSQ 228
++L L S+
Sbjct: 1750 EYLNELKASE 1759
>M37234-1|AAA28120.1| 272|Caenorhabditis elegans myosin I protein.
Length = 272
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 19 AEDFLHRFKLADDIRELLRAKNASIRAYDRYPTVDNRIRMRALQRDVKSRIAEVRDARWS 198
+ED HR + +D ++ L + A +++ + N + A++R V++ + R+
Sbjct: 201 SEDLAHRIEASDKHKKQLEIEQAELKS-SNTELIGNNAALSAMKRKVENEVQIARN-ELD 258
Query: 199 DFLERLAPSQ 228
++L L S+
Sbjct: 259 EYLNELKASE 268
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 461 RYRPSPRWKLKT*SNTYVLARLPVPTVYPTALLNFYPSNS 580
R R + ++T T VL R+ +P PTA +++ P NS
Sbjct: 1282 RQRLTVNMTIETPMETTVLERVELPFRLPTAQIHYQPRNS 1321
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 461 RYRPSPRWKLKT*SNTYVLARLPVPTVYPTALLNFYPSNS 580
R R + ++T T VL R+ +P PTA +++ P NS
Sbjct: 1282 RQRLTVNMTIETPMETTVLERVELPFRLPTAQIHYQPRNS 1321
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 461 RYRPSPRWKLKT*SNTYVLARLPVPTVYPTALLNFYPSNS 580
R R + ++T T VL R+ +P PTA +++ P NS
Sbjct: 1282 RQRLTVNMTIETPMETTVLERVELPFRLPTAQIHYQPRNS 1321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,671,568
Number of Sequences: 27780
Number of extensions: 361591
Number of successful extensions: 838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -