Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2405
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    32   0.061
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   5.3  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   7.0  

>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -3

Query: 281 HCDAGYSIQVECAAVGFQRSTSTTQMHKLLVKTVEFTITSINSMIH*ILEFTGY*D 114
           H  AG+SI   C +  F    S T   K      EFT    N     +L + GY D
Sbjct: 213 HPSAGHSIDSTCQSNSFLEGDSATHKKKKTDNIKEFTSCEFNDRSRTLLNYAGYMD 268


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 PACRDRYPTKYRNATHGSPHR 371
           PACR  +PTK RN T   P +
Sbjct: 262 PACRFIHPTKSRNMTWRPPSK 282


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 545 SYKKMAERSQSPKYEKTD-FAVTDTEEEGQG 634
           SY +  ERS SP Y K +   V D +   +G
Sbjct: 259 SYHRRRERSNSPSYTKNESIPVVDRDSSPEG 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,449
Number of Sequences: 5004
Number of extensions: 51315
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)