Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2404
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 34 0.017
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 28 1.1
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 28 1.1
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 27 2.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.6
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 6.0
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 6.0
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 6.0
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 26 6.0
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 25 8.0
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 8.0
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.0
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 8.0
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 34.3 bits (75), Expect = 0.017
Identities = 8/35 (22%), Positives = 23/35 (65%)
Frame = +3
Query: 99 DKKHKSLILKENCWKEIAKSLNKKPEECKNKWRNI 203
++ K+++ CW +I + + + P +C+++WR++
Sbjct: 322 EELRKNVVEHGKCWTKIGRKMARMPNDCRDRWRDV 356
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 495 VRPEKRRDHSLSEELSTYKEENEVILSRIRDKGN 596
VRP+KR + L+EEL YK+ +V+L + ++ N
Sbjct: 323 VRPKKR--NILTEELEKYKKSKKVVLGKRKNLEN 354
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 498 RPEKRRDHSLSE-ELSTYKEENEVILSR-IRDKGNSPVPRSFSSMADVGLPNAPR 656
R EK+R +++ E+S ++E + + +R+K P+ S D+G N PR
Sbjct: 162 RTEKQRKEAIARGEISDSEDEKHTVKQKPLREKKKKPLKSSEEISKDMGSYNLPR 216
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 318 GESCRTSDAVDACTNPSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQ 476
G +SD + N SS+ E QTP S+P+ QCFEDL+ Q
Sbjct: 12 GARSLSSDGLSESVN-SSDREDSLSFQTP-----STPSEDEMPQCFEDLIKPQ 58
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/130 (18%), Positives = 47/130 (36%)
Frame = +3
Query: 240 SGCATSFSKYDDERLKFIDSSCDEGEGESCRTSDAVDACTNPSSNLETYEEEQTPVHIVC 419
S T+ S SS S +S + + ++ SS+ + +
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 420 SSPASSTSTQCFEDLLTQQPAAAHSVRPEKRRDHSLSEELSTYKEENEVILSRIRDKGNS 599
S P +S+++ + +++ S RP + ST+ V S +S
Sbjct: 207 SVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSS 266
Query: 600 PVPRSFSSMA 629
VP S +++A
Sbjct: 267 EVPSSTAALA 276
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 57 LELIRSHPTLYRNKDKKHKSLILK-ENCWKEIAKSLNKKPEECKNKWRNIRD 209
LE + LY+ + K+K L K + C I KSL K+ E + K +N+ D
Sbjct: 1095 LESLNDKDQLYQLQATKNKELEAKVKECLNNI-KSLTKELENKEEKCQNLSD 1145
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Frame = -3
Query: 673 FWAIFSRGAF---GKPTSAMLLK----ERGTGLFPLSLIRLKITSFSS 551
F A+ S GA+ KP+SA+L + + G GLFPL+L +I+S S+
Sbjct: 292 FPALSSLGAWISWCKPSSAVLSQIFGVKTGLGLFPLTLDWAQISSLSN 339
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 285 KFIDSSCDEGEGESCRTSDAVDACTNPSSNLETYEEEQTP 404
+F+D E G S + S C+ P+S++ +EEE P
Sbjct: 303 QFLDDGYRECFGSSFKESLQQALCSAPTSSIAYHEEEINP 342
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 111 KSLILKENC-WKEIAKSLNKKPEECKNKWRN 200
K L+ K W I K N+ P C++ WR+
Sbjct: 268 KKLVEKHGTSWSLIGKLSNRLPMHCRDHWRD 298
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 291 IDSSCDEGEGESCRTSDAVDACTNPSSNLETY 386
I++SCD+ RTSD+ C N L T+
Sbjct: 44 IETSCDDTSVSVVRTSDSSSHCQNEIICLNTH 75
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 18 RHRVTMNSFEDNLLELIRSHPTLYRNKDKKHKSLILKENCWKEIAKSLNKKPEECKNKWR 197
RH V F D L+ + + T+ K+H S LK+N I +L P KWR
Sbjct: 187 RHMVPYEEFLDAYLKDVNTLRTVI----KEHWSRFLKDNSTAFILFALEVYPMHRLKKWR 242
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 252 TSFSKYDDERLKFIDSSCDEGEGESC 329
+S ++ DERLK +CDE E E C
Sbjct: 220 SSITRNTDERLKMAQVNCDE-EKEMC 244
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 48 DNLLELIRSHPTLYR--NKDKKHKSLILKENCWKEIAKSLNKK 170
+N+L+ I+S R NK+ K+L L+ NC + AKS ++
Sbjct: 439 ENMLDYIQSTYVSSRQYNKEINEKTLSLQINCSRLYAKSFGRQ 481
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 564 LRSPLYTCLILPKDYGLFFFLVLRYEL 484
LR+P++ C I + + FF L +++L
Sbjct: 362 LRTPMFDCFISSESFQSFFILQKQFQL 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,218
Number of Sequences: 5004
Number of extensions: 55721
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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