Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2404
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 33 0.22
01_05_0286 - 20403748-20403828,20404493-20404693,20404774-204049... 32 0.51
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 30 1.6
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 30 2.1
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 30 2.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.1
04_03_0376 + 15105874-15106230,15109207-15111573 29 2.7
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 29 2.7
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 29 3.6
05_03_0459 - 14284513-14286336 29 3.6
02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080 29 3.6
12_02_1205 - 26982163-26982702 29 4.8
12_01_0703 + 6058765-6059091,6059153-6059464,6059560-6059574 28 6.3
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 28 6.3
10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179 28 6.3
09_04_0294 - 16444565-16445137,16445999-16446256,16446609-164471... 28 6.3
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 6.3
01_06_1065 - 34238812-34239307,34239583-34240154,34241687-342419... 28 6.3
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420 28 8.3
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562... 28 8.3
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 33.1 bits (72), Expect = 0.22
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Frame = +3
Query: 345 VDACTNPSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQPAAAHSVRPEKRRDHS 524
V A + E E EQ PA++ F L AA + +K + +
Sbjct: 8 VGAWALDAERAEEEEREQAAAFPAPEPPAAAGGAASFPSLREAAAAAGGGKQKKKNKGTT 67
Query: 525 LS-EELSTYKEENEVILSRIRDKGNSPV-PRSFSSMADVGLPNAPREKIAQNFD 680
LS E S Y + + R G +PV PR + + LP PRE+ A+ D
Sbjct: 68 LSLSEFSGYGAQGQ----RRGGGGAAPVDPRGLTPEEMMMLPTGPRERSAEELD 117
>01_05_0286 -
20403748-20403828,20404493-20404693,20404774-20404955,
20405022-20405187,20405318-20405506,20409155-20409238,
20409482-20409550,20409638-20409700,20410327-20410425,
20410882-20410983,20411237-20411341,20412259-20412372
Length = 484
Score = 31.9 bits (69), Expect = 0.51
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Frame = +3
Query: 246 CATSFSKYDDERLKFIDSSCDEG-EGESCRTSDAVDACTNPSSNLETYEEE-QTPVHIVC 419
C+ S D+ ++ I +E + ESC +D S ++T E+ + H
Sbjct: 151 CSKSSQIRKDKNVQDITRDSEESKQSESCIPTDKNVQDIASDSEIKTSEQRVDSTTHATS 210
Query: 420 --SSPASSTSTQCFEDLLTQQPAAAHSVRPEKRRDH----SLSEELSTYKEENEVILSRI 581
SP + T T+ L+ QQ ++ ++ H SL+ ++ +KEE + +
Sbjct: 211 HKDSPETETLTRKLIMLIEQQGKEMKEMKQNQQSMHNQIQSLTNIIAAFKEEKTISTTSK 270
Query: 582 RDKGNSPVP 608
K N P P
Sbjct: 271 NSKPNKPNP 279
>03_06_0222 + 32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 297 SSCDEGEGESCRTSDAVDACTNPSSNLETYEEEQTPV 407
+SC E E SCR SD + +SN E ++ Q+P+
Sbjct: 1131 NSCKEAENSSCR-SDMLFLSREGNSNTEEFDVSQSPI 1166
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 474 QPAAAHSVRPEKRRDHSLSEELSTYKEENEVILSRIRD 587
QPA A + ++ +D LSEE KE+ E+ + R +D
Sbjct: 20 QPAKAKGKKKDENKDDDLSEEDQALKEQLELYVVRAQD 57
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/90 (25%), Positives = 36/90 (40%)
Frame = +3
Query: 294 DSSCDEGEGESCRTSDAVDACTNPSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQ 473
+ +C E ES TS V C N L E+E P + CS + E ++
Sbjct: 62 EDTCKETNPES--TSSQVP-CENGDGCLNGLEQEALPSEVACSPSLKDSHNLLLEG--SE 116
Query: 474 QPAAAHSVRPEKRRDHSLSEELSTYKEENE 563
+ A R + EEL T+ +E++
Sbjct: 117 EDAICRRTRARYSLANKSLEELETFLQESD 146
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = +3
Query: 351 ACTNPSSNLETYEEEQT--PVHIVCSSPASSTSTQCFEDLLTQQ--PA-AAHSVRPEKRR 515
A TNPSS++++ E E+T P + +S ++ ED + + P+ +RP K+
Sbjct: 405 ATTNPSSDIQSIEPEETKGPSDVKAEEVSSQSNVAFAEDAVQDKVIPSEPPEDIRPVKKL 464
Query: 516 DHSLSEEL-STYKEENEVILSRIRDK 590
+ ++E E N I S + +
Sbjct: 465 EQEETKEADEASNETNSAIFSDLNQE 490
>04_03_0376 + 15105874-15106230,15109207-15111573
Length = 907
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 552 EENEVILSRIRDKGNSPVPRSFSSMADVGLPNAPREKIAQ 671
++ E I+S +RD+ S R FS + G+P + + +AQ
Sbjct: 195 KDREEIISMLRDENQSSADRCFSVIGIHGIPGSGKTTLAQ 234
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 297 SSCDEGEGESCRTSDAVDACTNPSSNLETYEE--EQTPVHIVCSSPASSTSTQCFEDL 464
++C + + C D A P + LE + E TP+ S+P +STST DL
Sbjct: 297 TNCADVHIQPCEFKDEKPAFPEPKTVLEVMDSSPELTPLEDAYSAPVASTSTVTIIDL 354
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 474 QPAAAHSVRPEKRRDHSLSEELSTYKEENEVILSRIRD 587
QPA + ++++D LSEE KE+ E+ + R +D
Sbjct: 30 QPAKGKGKKKDEKKDDDLSEEDQALKEQLELYVVRAQD 67
>05_03_0459 - 14284513-14286336
Length = 607
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +3
Query: 339 DAVDACTNPSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQPAAAHSVRPEKRRD 518
+ +D C S + + +TP SS SS+S+ C + + + S RP+ D
Sbjct: 400 ELIDICGGIDSPVSVSKFPETPRS---SSSDSSSSSSCSGSSSSSERNDSASSRPDTTAD 456
Query: 519 HSLSEELSTYKEENEVI 569
H E+ +E+ +I
Sbjct: 457 HPTEAEVKPMEEQKLII 473
>02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080
Length = 608
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 84 LYRNKDKKHKSLILKENCWKEIAKSL-----NKKPEECKNKWRNI 203
L K++++ + K W+EIA + N+ + CK KW NI
Sbjct: 387 LRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENI 431
>12_02_1205 - 26982163-26982702
Length = 179
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 300 SCDEGEGESCRTSDAVDACTNPSSNLETY 386
SC G G +CR S DA PS N +T+
Sbjct: 137 SCSSGVGLTCRDSRCPDAYLFPSDNSKTH 165
>12_01_0703 + 6058765-6059091,6059153-6059464,6059560-6059574
Length = 217
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 423 LNKLYARAFALLRKF-LDCCWGSCKHRQRRWFY 328
++K+Y + + K L+ WG CK R RW +
Sbjct: 152 IHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVW 184
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 423 LNKLYARAFALLRKF-LDCCWGSCKHRQRRWFY 328
++K+Y + + K L+ WG CK R RW +
Sbjct: 276 IHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVW 308
>10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179
Length = 404
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 423 LNKLYARAFALLRKF-LDCCWGSCKHRQRRWFY 328
++K+Y + + K L+ WG CK R RW +
Sbjct: 152 IHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVW 184
>09_04_0294 -
16444565-16445137,16445999-16446256,16446609-16447106,
16449641-16449676,16451057-16451269,16451971-16452060,
16453627-16453851
Length = 630
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 423 LNKLYARAFALLRKF-LDCCWGSCKHRQRRWFY 328
++K+Y + + K L+ WG CK R RW +
Sbjct: 379 IHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVW 411
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 333 TSDAVDACTNPSSNLETYEEEQTP--VHIVCSS-PASSTSTQCFEDLLTQQPAAAHSVRP 503
+SD +A SS+ ++ VH++ ++ P +++ + AA+ S
Sbjct: 425 SSDGKEARDQASSSSHKSQDAAVGSLVHLLKTARPLRNSNCPSQASAVESSEAASTSSVV 484
Query: 504 EKRRDHSLSEELSTYKEENEVILSRIRDKGNSP 602
+R+ +L EEL ++KE E ++SR R K P
Sbjct: 485 SRRKSDAL-EELQSFKEIKERLMSRSRAKQQEP 516
>01_06_1065 -
34238812-34239307,34239583-34240154,34241687-34241998,
34242060-34242386
Length = 568
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 423 LNKLYARAFALLRKF-LDCCWGSCKHRQRRWFY 328
++K+Y + + K L+ WG CK R RW +
Sbjct: 152 IHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVW 184
>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
Length = 1407
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 420 SSPASSTSTQCFEDLLTQQPAAAHSVRPEKRRDH-SLSEELSTYK 551
SSP ++ Q FE L+ A +V +K DH + + ++S Y+
Sbjct: 438 SSPMTTVQLQAFEGLVNMLTTIADNVEVDKAPDHAAYAVDISDYR 482
>01_05_0714 +
24555494-24555637,24555884-24556071,24556195-24556280,
24556359-24556461,24556798-24557000,24557077-24557681,
24557784-24557918,24558040-24558067,24559517-24559596,
24559873-24559975,24560553-24560635,24560915-24561017,
24561596-24561720,24562001-24562103,24562647-24562726,
24563322-24563429,24563521-24563565
Length = 773
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Frame = +3
Query: 333 TSDAVDACTNPSSNLETYEEEQT-------PVHIVCSSPASSTSTQ 449
+SDA DA P+S ET E QT H + + P SS S+Q
Sbjct: 186 SSDAPDAIEAPASQTETVTESQTTQDDVHGSAHEMTTEPVSSRSSQ 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,071
Number of Sequences: 37544
Number of extensions: 363008
Number of successful extensions: 1373
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -