Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2404
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036701-6|AAK68607.1| 139|Caenorhabditis elegans Hypothetical ... 46 3e-05
Z81457-1|CAB03812.1| 423|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81042-7|CAE46660.1| 371|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z73976-9|CAA98280.2| 371|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC006661-6|AAF39889.1| 312|Caenorhabditis elegans Hypothetical ... 31 1.1
AL031633-26|CAA21013.2| 465|Caenorhabditis elegans Hypothetical... 30 1.4
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.4
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 28 7.5
AF040655-1|AAK84577.2| 678|Caenorhabditis elegans Hypothetical ... 28 7.5
Z81589-1|CAB04717.1| 272|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 27 9.9
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 9.9
AY551964-1|AAS65428.1| 795|Caenorhabditis elegans enhancer of p... 27 9.9
AL132904-22|CAC35840.2| 795|Caenorhabditis elegans Hypothetical... 27 9.9
>AF036701-6|AAK68607.1| 139|Caenorhabditis elegans Hypothetical
protein ZC416.1 protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 42 FEDNLLELIRSHPTLYRNKDKKHKSLILKENCWKEIAKSLNKKPEECKNKWRNIRDNY 215
F L+ +++ P LY D+ + L + + W EIA++L E K +W+ +RD Y
Sbjct: 49 FNIRLIAEVKARPFLYDQSDEGYNLLSWRNSAWNEIAENLETTSEHVKTRWKTLRDRY 106
>Z81457-1|CAB03812.1| 423|Caenorhabditis elegans Hypothetical
protein C01G12.1 protein.
Length = 423
Score = 39.9 bits (89), Expect = 0.002
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 15/182 (8%)
Frame = +3
Query: 39 SFEDNLLELIRSHPTLYRNKDKKHKSLILKENCWKEIAKSL--NKKPEECKNKWRNIRDN 212
+F L+ +R +P LY + + + ++ W+ IAK++ N E K +W +RD
Sbjct: 6 AFNARLINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNCAAEFAKKRWLQLRDR 65
Query: 213 Y-XXXXXXXXSGCATSFSKYDDERLKFIDSSCDEG------EGESCRTSDAVDACT-NPS 368
Y +G T +L ++D + EG+ SD+ D + P
Sbjct: 66 YRKELKIAIKNGFVTPVRWCYFNQLSWLDPFLKDNIGQAADEGKKTGKSDSFDEPSGTPF 125
Query: 369 S-----NLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQPAAAHSVRPEKRRDHSLSE 533
S NL + ++E S PA +S + LL Q S+ PE D S ++
Sbjct: 126 SWFGFPNLNSIKDEMEDDD---SDPALESSV--LDRLLAQTAQRLDSISPEIENDESGTQ 180
Query: 534 EL 539
L
Sbjct: 181 SL 182
>Z81042-7|CAE46660.1| 371|Caenorhabditis elegans Hypothetical
protein T07C12.11 protein.
Length = 371
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 21 HRVTMNSFEDNLLELIRSHPTLYRNKDKKHKSLILKENCWKEIAKSL--NKKPEECKNKW 194
H + F L++ ++ +P +Y D HK K WK I+ + + +P E + KW
Sbjct: 11 HDPLEDDFTLALIDSVQRNPCVYNRYDPLHKVTDYKHEIWKLISIEIGYDGQPVELERKW 70
Query: 195 RNIRDNY 215
+++RD Y
Sbjct: 71 KHMRDKY 77
>Z73976-9|CAA98280.2| 371|Caenorhabditis elegans Hypothetical
protein T07C12.11 protein.
Length = 371
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 21 HRVTMNSFEDNLLELIRSHPTLYRNKDKKHKSLILKENCWKEIAKSL--NKKPEECKNKW 194
H + F L++ ++ +P +Y D HK K WK I+ + + +P E + KW
Sbjct: 11 HDPLEDDFTLALIDSVQRNPCVYNRYDPLHKVTDYKHEIWKLISIEIGYDGQPVELERKW 70
Query: 195 RNIRDNY 215
+++RD Y
Sbjct: 71 KHMRDKY 77
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 357 TNPSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQPAAAHSVRPEKR 512
T P + YEE TP+ SSP++STST T + +V P R
Sbjct: 75 TTPERLTKPYEETDTPIP-THSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTR 125
>AC006661-6|AAF39889.1| 312|Caenorhabditis elegans Hypothetical
protein H20J04.3 protein.
Length = 312
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Frame = +3
Query: 42 FEDNLLELIRSHPTLYRNKDKKHKSLILKENCWKEIAKSLN--KKPEECKNKWRNIRDNY 215
F NL+ +R HP LY +D K++ + W I L +W+ RD Y
Sbjct: 119 FGKNLILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYPGTVPSIYKQWKKHRDRY 178
Query: 216 XXXXXXXXS------GCATSFSKYDDERLKFIDSSCDEGEGESCRTS 338
+ +++ YDD + +ID DE + C S
Sbjct: 179 VREKRRLRNLGDPNVQDVSTWEMYDD--MAWIDQHLDEQQLSRCARS 223
>AL031633-26|CAA21013.2| 465|Caenorhabditis elegans Hypothetical
protein Y39A1A.9 protein.
Length = 465
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 288 FIDSSCDEGEGESCRTSDAVDACTNPSSNLETYEEEQTPVHIVCSSPAS 434
+++S D G+S R+S + T+PSS L+ +E ++C +P+S
Sbjct: 35 WVNSQNDSDNGDSIRSSTSSQPQTSPSSGLDDHEH-----RLLCDTPSS 78
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 297 SSCDEGEGESCRTSDAVDACTNPSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQ 476
SS D +S T+ + + T+ +S+ T + T V SS +SST+T C + T
Sbjct: 83 SSSDTTTADSSSTTSSDSSTTSSNSSSSTSSSDSTSV---VSSTSSSTTTTCVDSFSTCT 139
Query: 477 PAAAH 491
AA+
Sbjct: 140 SWAAN 144
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +3
Query: 33 MNSFEDNLL----ELIRSHPTLYRNKDKKHKSLILKEN 134
+N+++ N + ++IR YR++D K++ + LKEN
Sbjct: 72 LNTWDSNFMKIDDDIIRKEALHYRDQDMKNREMYLKEN 109
>AF040655-1|AAK84577.2| 678|Caenorhabditis elegans Hypothetical
protein T24E12.5 protein.
Length = 678
Score = 27.9 bits (59), Expect = 7.5
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = +3
Query: 321 ESCRTSDAVDACTN--PSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQPAAAHS 494
+ R S+++ N P L+TY E + + + + D +P H
Sbjct: 201 KEARNSESIRLTANVIPGETLKTYAELNEILFNQLNENRTGSPVFRKSDSYWYEPEKDHF 260
Query: 495 -VRPEKRRDHSL--------SEELSTYKEENEVILSRIRD-KGNSPVPRSFSS 623
V E R S+ E L TY E NE++ +++ + + SPV R F S
Sbjct: 261 YVSKEARNSESIRLTANVIPGETLKTYAELNEILFNQLNENRTGSPVLRIFDS 313
>Z81589-1|CAB04717.1| 272|Caenorhabditis elegans Hypothetical
protein T08G5.1 protein.
Length = 272
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +3
Query: 390 EEQTPVHIVCSSPASS----TSTQCFEDLLTQQPAAAHSVRPEKRRDHSLSEELSTYKE- 554
++ TP + V +SP S + + ED++T+QP + E+ D ++ E+ T +E
Sbjct: 38 DDWTPFNSVPTSPDSVRRRFSEARLQEDVITEQPRLFDNHSREQDDDRMMNYEVMTIREV 97
Query: 555 ENEVIL 572
E+ +IL
Sbjct: 98 ESPIIL 103
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 315 EGESCRTSDAVDACTNPSSNLETYEEEQTPVH-IVCSSPASSTSTQCFEDLLTQQPAAAH 491
E + + D T+ S+++ + + + H I +S A+STS+ T++ A
Sbjct: 381 ESDDSESDDGSKPSTSASASVSSSSKHKKDKHDIPSTSSAASTSSSSSSKHETKEERKAR 440
Query: 492 SVRPEKRRDHSLSEELSTYKEENE 563
+ +R + +E ++EE +
Sbjct: 441 KEKERERAEKKAKKEKDGHREEEK 464
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 9.9
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = +3
Query: 357 TNPSSNLETYEEEQTPVHIVCSSPASSTSTQCFEDLLTQQPAAAHSVRPEKRRDHSLSEE 536
T+ S + + QTP + +SPA STSTQ + + T P + + R S
Sbjct: 1175 TSTSGEITSQGSTQTPRSSLSTSPAISTSTQ--QSVSTNSPGSTVTQPSTVRGSTSSGST 1232
Query: 537 LSTYKEENEVI---LSRIRDKGNSPVPRSFSS 623
++T E S +SPVP + S
Sbjct: 1233 VTTGSTEGSSTSGSSSATSLSSSSPVPSTSQS 1264
>AY551964-1|AAS65428.1| 795|Caenorhabditis elegans enhancer of
polycomb protein.
Length = 795
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 69 RSHPTLYRNKDKKHKSLILKENCWKEIAK 155
R H T Y NK+K H+S +K + W+ + +
Sbjct: 89 RYHST-YHNKNKMHRSKYIKVHAWQALER 116
>AL132904-22|CAC35840.2| 795|Caenorhabditis elegans Hypothetical
protein Y111B2A.11 protein.
Length = 795
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 69 RSHPTLYRNKDKKHKSLILKENCWKEIAK 155
R H T Y NK+K H+S +K + W+ + +
Sbjct: 89 RYHST-YHNKNKMHRSKYIKVHAWQALER 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,438
Number of Sequences: 27780
Number of extensions: 322433
Number of successful extensions: 1312
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -