Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2401
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 140 9e-35
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 42 8e-05
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 41 1e-04
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 40 2e-04
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 39 4e-04
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 36 0.003
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 34 0.016
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 32 0.064
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 32 0.064
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 31 0.085
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 31 0.15
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 29 0.45
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 29 0.60
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 27 1.4
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 2.4
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 5.6
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 5.6
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 5.6
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 7.3
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 7.3
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.7
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 25 9.7
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 140 bits (340), Expect = 9e-35
Identities = 71/131 (54%), Positives = 85/131 (64%)
Frame = +3
Query: 93 EAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNA 272
EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L
Sbjct: 161 EAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAE 220
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRKNTHWLVLL 452
VGYDDIGGCR+Q+AQI+E+VELPLRH LFK I + R G PGT K +
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKP-PRGILMYGPPGTGKTLMARAVA 279
Query: 453 LMKQELFFFFN 485
FF N
Sbjct: 280 NETGAFFFLIN 290
Score = 49.6 bits (113), Expect = 3e-07
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = +2
Query: 5 KRVHILPIDDSVEGLTGNLFEVYLKPYFM 91
+R+ +LP+ D+VEGLTG+LF+VYLKPYF+
Sbjct: 132 ERISVLPLADTVEGLTGSLFDVYLKPYFV 160
Score = 33.9 bits (74), Expect = 0.016
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +1
Query: 373 GVKPSPGISHVWAALVPGKTLIGLXXXXXNKSFSFFLINGPGDHCFKLAGESGVNL 540
G+KP GI ++ GKTL+ +F FFLINGP + K+AGES NL
Sbjct: 254 GIKPPRGIL-MYGPPGTGKTLMARAVANETGAF-FFLINGP-EIMSKMAGESESNL 306
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 41.5 bits (93), Expect = 8e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
Y+ +GG KQ+ +IKE++ELP++H LF+ + + G PGT K
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQ-PKGILLYGPPGTGK 192
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 40.7 bits (91), Expect = 1e-04
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
+AV + IGG + Q+AQI+++VELP ++ LFK ++ R G PGT K
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFK-FFNIMPPRGVLLYGPPGTGK 326
Score = 29.1 bits (62), Expect = 0.45
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 243 REEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLF 362
RE E+ N V + DIGG + ++KE VE PL H F
Sbjct: 536 REFMMESPN-VHWSDIGGQEEVKQKLKESVEWPLTHGETF 574
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +3
Query: 225 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSC 404
D +P+ + + Y DIGG Q+ +IKE VELPL H L++ + + +
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKP-PKGVIL 230
Query: 405 MGRPGTRK 428
G PGT K
Sbjct: 231 YGAPGTGK 238
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
V Y D+GGC++Q+ +++E+VELPL F + + + G PGT K
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDP-PKGIMLYGPPGTGK 226
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
V Y D+GG Q +++E VELPL L++ I + R G PGT K
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDP-PRGVLLYGPPGTGK 181
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 33.9 bits (74), Expect = 0.016
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
+ + +GG +Q+ +++E++ELPL++ LF + + + G PGT K
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKP-PKGVLLYGPPGTGK 179
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 31.9 bits (69), Expect = 0.064
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
+++ ++ +GG + Q+KEMV LPL + +F+ + R G PGT K
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQP-PRGVLFHGPPGTGK 313
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 31.9 bits (69), Expect = 0.064
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
Y DIGG KQ+ ++ E + LP++ + F+ + + + G PGT K
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKP-PKGCLMFGPPGTGK 232
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 31.5 bits (68), Expect = 0.085
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 219 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHF 398
H D + I+ + + ++ IGG + Q+KEMV LPL + +F + R
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITP-PRGV 409
Query: 399 SCMGRPGTRK 428
G PGT K
Sbjct: 410 LFHGPPGTGK 419
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 30.7 bits (66), Expect = 0.15
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRKNTHWLVLL 452
V +DDI G +KE V P LF+G+ A R G PGT K +
Sbjct: 456 VHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLREPA--RGMLLFGPPGTGKTMLARAVA 513
Query: 453 LMKQELFF 476
+ +FF
Sbjct: 514 TESRSVFF 521
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 29.1 bits (62), Expect = 0.45
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 240 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
K E E + + DIGG + ++ E+V +P++H +++
Sbjct: 160 KAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQ 201
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLF 362
V +DDIGG + +++ ++LPL+ LF
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLF 362
V +DDIGG + + Q+ + V PL++ +F
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 198 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 287
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 389 PAFLMYGPPWYPEKHSLACAVANETRAFL 475
PA ++Y PW HSL VA++ ++
Sbjct: 235 PAGVVYDSPWVDLTHSLPSVVADDAADYI 263
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLF 362
V +DDI G +KE V LP++ LF
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 453 ATAQANECFSGYQGGPYMRNAG*RLHSKY 367
ATA + + + G PY N R+HSK+
Sbjct: 163 ATASDDNSINFFHGTPYRFNRSLRVHSKF 191
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 309 LAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRKNTHWLV 446
L+ + E +P S+ + EAF R F C G+ T ++ H L+
Sbjct: 55 LSNVVESQTIPEEDSTSYLNRLEEAFCRDFRCCGQ--TLEDLHQLI 98
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 159 FKVVETDPSPFCIV-APDTVIHCDGEPIKREEEEEA--LNAVGYD 284
FKV E+D PFC + P+T + D + R+ E + GYD
Sbjct: 33 FKVQESDEEPFCALHHPNTGEYFDLSGLIRDNTSEKGDYSVNGYD 77
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 177 DPSPFCIVAPDTVIHCDGEPIKREEEEEALNAV 275
D + F + TV+ C GE + E E +N V
Sbjct: 111 DKTKFALEQGLTVVACIGETLAEREANETINVV 143
>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 142
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 46 SYWQSIRSILEAVLHGRLTV-RSIVTTPSWSAGAC 147
S+W I LEA+ G L + + + + +W A +C
Sbjct: 73 SFWSLIEGCLEALQFGLLAILQGLFSQFAWEACSC 107
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 223 QCITVSG-ATMQNGDGSVSTTLNSTARMPPR 134
+C T+ G QN +G +ST NSTA + P+
Sbjct: 83 RCYTIIGFPEFQNSNG-ISTLYNSTALISPK 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,427
Number of Sequences: 5004
Number of extensions: 51299
Number of successful extensions: 150
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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