Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2401
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 162 1e-40
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 162 1e-40
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 157 6e-39
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 44 5e-05
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 42 2e-04
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 42 2e-04
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 40 9e-04
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 39 0.003
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 39 0.003
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 38 0.006
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 37 0.008
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 37 0.011
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 29 1.7
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 29 1.7
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 29 1.7
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 29 1.7
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 29 1.7
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 29 2.2
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 2.9
U29381-1|AAA68751.2| 133|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical pr... 27 8.9
AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans Na/Ca,K-excha... 27 8.9
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 162 bits (394), Expect = 1e-40
Identities = 78/112 (69%), Positives = 87/112 (77%)
Frame = +3
Query: 93 EAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNA 272
+AYRP+H+ D F V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN
Sbjct: 146 DAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNE 205
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
VGYDD+GG RKQLAQIKEMVELPLRH LFK I + R G PGT K
Sbjct: 206 VGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKP-PRGILLFGPPGTGK 256
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +2
Query: 2 GKRVHILPIDDSVEGLTGNLFEVYLKPYF 88
GKRVH+LPIDD++EGLTGNLF+V+L+PYF
Sbjct: 116 GKRVHVLPIDDTIEGLTGNLFDVFLRPYF 144
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 398 LMYGPPWYPEKHSLACAVANETRAFLFF*LMDPEII 505
L++GPP K +A AVANET AF FF + PEI+
Sbjct: 247 LLFGPPG-TGKTLIARAVANETGAF-FFLINGPEIM 280
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 162 bits (394), Expect = 1e-40
Identities = 78/112 (69%), Positives = 87/112 (77%)
Frame = +3
Query: 93 EAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNA 272
+AYRP+H+ D F V+ MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN
Sbjct: 146 DAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNE 205
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
VGYDD+GG RKQLAQIKEMVELPLRH LFK I + R G PGT K
Sbjct: 206 VGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKP-PRGILLFGPPGTGK 256
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +2
Query: 2 GKRVHILPIDDSVEGLTGNLFEVYLKPYF 88
GKRVH+LPIDD++EGLTGNLF+V+L+PYF
Sbjct: 116 GKRVHVLPIDDTIEGLTGNLFDVFLRPYF 144
Score = 30.7 bits (66), Expect = 0.72
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 398 LMYGPPWYPEKHSLACAVANETRAFLFF*LMDPEII 505
L++GPP K +A AVANET AF FF + PEI+
Sbjct: 247 LLFGPPG-TGKTLIARAVANETGAF-FFLINGPEIM 280
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 157 bits (380), Expect = 6e-39
Identities = 76/131 (58%), Positives = 91/131 (69%)
Frame = +3
Query: 93 EAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNA 272
EAYRP+H+ D F V+ MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N
Sbjct: 147 EAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMND 206
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRKNTHWLVLL 452
+GYDD+GG RKQLAQIKEMVELPLRH LFK I + R G PGT K +
Sbjct: 207 IGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKP-PRGILLFGPPGTGKTLIARAVA 265
Query: 453 LMKQELFFFFN 485
FF N
Sbjct: 266 NETGSFFFLIN 276
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +2
Query: 2 GKRVHILPIDDSVEGLTGNLFEVYLKPYFM 91
G R+H+LPIDD++EGLTGNLF+V+LKPYF+
Sbjct: 117 GTRIHVLPIDDTIEGLTGNLFDVFLKPYFL 146
Score = 35.5 bits (78), Expect = 0.025
Identities = 25/59 (42%), Positives = 32/59 (54%)
Frame = +1
Query: 364 RVFGVKPSPGISHVWAALVPGKTLIGLXXXXXNKSFSFFLINGPGDHCFKLAGESGVNL 540
+ G+KP GI ++ GKTLI SF FFLINGP + K++GES NL
Sbjct: 237 KAIGIKPPRGIL-LFGPPGTGKTLIARAVANETGSF-FFLINGP-EVMSKMSGESESNL 292
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
+DDIGGC Q+ ++KE VELPL H ++ + A + G PGT K
Sbjct: 182 FDDIGGCESQIQELKESVELPLTHPEYYEEMGITA-PKGVILYGEPGTGK 230
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 231 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCM- 407
+P+ + E + Y D+GG +Q+ +++E+VELPL + LFK + T C+
Sbjct: 125 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRV---GITPPKGCLL 181
Query: 408 -GRPGTRK 428
G PGT K
Sbjct: 182 FGPPGTGK 189
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 231 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCM- 407
+P+ + E + Y D+GG +Q+ +++E+VELPL + LFK + T C+
Sbjct: 133 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRV---GITPPKGCLL 189
Query: 408 -GRPGTRK 428
G PGT K
Sbjct: 190 FGPPGTGK 197
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
Y+ +GG KQ+ +IKE++ELP++H LF + A + G PGT K
Sbjct: 158 YEMVGGLDKQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLFGPPGTGK 206
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
V Y D+GGC+ Q+ +++E+VE PL H + + E + G PGT K
Sbjct: 174 VTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEP-PKGVLLYGPPGTGK 224
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
Y+ +GG Q+ +IKE++ELP++H LF + A + G PGT K
Sbjct: 153 YEMVGGLDTQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGK 201
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
Y+ +GG Q+ +IKE++ELP++H LF + A + G PGT K
Sbjct: 174 YEMVGGLDTQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGK 222
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 273 VGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
+ Y DIGG Q +++E VELPL H L++ I + R G PG K
Sbjct: 158 ISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDP-PRGVLMYGPPGCGK 208
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 37.1 bits (82), Expect = 0.008
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 213 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTR 392
V+ D +P+ + E Y D+GG +Q+ +IKE VELPL H ++ + +
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRP-PK 223
Query: 393 HFSCMGRPGTRK 428
G PGT K
Sbjct: 224 GVILYGCPGTGK 235
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
Y DIGGC KQ+ ++ E V LP+ H F + + G PGT K
Sbjct: 176 YSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHP-PKGVLMYGPPGTGK 224
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 33.9 bits (74), Expect = 0.077
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 255 EEALNAVGY--DDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRPGTRK 428
+E L+ G DD+ GC A ++E V LP + +LFKG+ + G PG K
Sbjct: 167 DEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFKGLRQP--VKGILLFGPPGNGK 224
Query: 429 NTHWLVLLLMKQELFF 476
+ +++FF
Sbjct: 225 TLLAKAVAGESKQMFF 240
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 33.5 bits (73), Expect = 0.10
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSS 356
+D+IGGC + +A++K+ + LPLR +S
Sbjct: 79 WDEIGGCEELVAELKDRIILPLRFAS 104
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 33.5 bits (73), Expect = 0.10
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +3
Query: 279 YDDIGGCRKQLAQIKEMVELPLRHSS 356
+D+IGGC + +A++K+ + LPLR +S
Sbjct: 82 WDEIGGCEELVAELKDRIILPLRFAS 107
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
++VG+D +GG + +KE+V P+ + +F+
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFE 418
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
++VG+D +GG + +KE+V P+ + +F+
Sbjct: 384 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFE 416
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
++VG+D +GG + +KE+V P+ + +F+
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFE 418
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
++VG+D +GG + +KE+V P+ + +F+
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFE 418
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
++VG+D +GG + +KE+V P+ + +F+
Sbjct: 384 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFE 416
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
++VG+D +GG + +KE+V P+ + +F+
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFE 418
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 267 NAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFK 365
++VG+D +GG + +KE+V P+ + +F+
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFE 418
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 379 KPSPGISHVWAALVPGKTLIGLXXXXXNKSFSFFL 483
KPSP S +W L+ G+ IG+ K+ +F L
Sbjct: 106 KPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLL 140
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 174 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 284
++P+P VAP+ + E + E+EE A+ +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191
>U29381-1|AAA68751.2| 133|Caenorhabditis elegans Hypothetical
protein F35D11.5 protein.
Length = 133
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +3
Query: 237 IKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPLRHSSLFKGIWSEAFTRHFSCMGRP 416
I+++++ E L + +D+ +K+ A+ E V + K I+++ + H S
Sbjct: 38 IEKKKDNEMLETIDIEDLPRPQKRFAKQFEKV-----NQERVKEIFAKNYKNHISFAVLL 92
Query: 417 GTRKNTHWLVLLLMKQELF 473
G +W + +KQE F
Sbjct: 93 GVVIGIYWYTMYSVKQETF 111
>Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical
protein F35C12.2a protein.
Length = 596
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 140 GHARRRVQSGRNRSITILHRGS*YRN 217
G RR S R +S+ ILH G+ +RN
Sbjct: 292 GSELRRRSSARRQSVPILHSGTMFRN 317
>AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans
Na/Ca,K-exchanger protein.
Length = 596
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 140 GHARRRVQSGRNRSITILHRGS*YRN 217
G RR S R +S+ ILH G+ +RN
Sbjct: 292 GSELRRRSSARRQSVPILHSGTMFRN 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,650
Number of Sequences: 27780
Number of extensions: 306462
Number of successful extensions: 750
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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