Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2401
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   6.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 362  EQ*RMTQWQLHHLLNLRQLFATPAD 288
            +Q +  Q QL+H  +L  L+A P D
Sbjct: 1458 QQQQQQQQQLNHYPDLHNLYAVPTD 1482


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 328 WWSCHCVILHCSRVFG 375
           WW+   VI+ C  +FG
Sbjct: 188 WWALILVIVPCLTLFG 203


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 87  SWEAYRPIHRDDTFM 131
           SWE + P+   DT++
Sbjct: 52  SWEVHDPVTNSDTYI 66


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 5/26 (19%), Positives = 14/26 (53%)
 Frame = +1

Query: 124 PSWSAGACAPSSSKWSKQIHHHFASW 201
           P W+ G    ++ + ++++H    +W
Sbjct: 165 PVWAIGTGKTATPQQAQEVHEKLRNW 190


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 464 LFH*QQHKPMSVFPGTRAAHT*EMPGEGFTPN 369
           +FH Q+      + G R +   E+P  G  P+
Sbjct: 420 VFHVQETDKYDAYYGNRFSGEYEIPAHGLPPS 451


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 184 DGSVSTTLNSTARMPPRTMKVSS 116
           +G   TTLN+T    P  ++++S
Sbjct: 298 NGPTQTTLNATTLFCPPNLRLTS 320


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 184 DGSVSTTLNSTARMPPRTMKVSS 116
           +G   TTLN+T    P  ++++S
Sbjct: 388 NGPTQTTLNATTLFCPPNLRLTS 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,557
Number of Sequences: 438
Number of extensions: 4041
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)