Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2397
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0079 + 9669666-9669728,9670779-9672545                           30   1.1  
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420           30   1.1  
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    30   1.4  
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200...    28   5.7  
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313     27   7.5  
05_06_0150 - 25994562-25995980                                         27   10.0 
01_06_1749 - 39636951-39638102                                         27   10.0 

>11_03_0079 + 9669666-9669728,9670779-9672545
          Length = 609

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 131 ITAGLEAFPVSLGQVGEQGLSQEGWDFLTTARAPP 27
           I  GL+ +   +  +G  GL +E WD + T   PP
Sbjct: 453 IKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPP 487


>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
          Length = 647

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 131 ITAGLEAFPVSLGQVGEQGLSQEGWDFLTTARAPP 27
           I  GL+ +   +  +G  GL +E WD + T   PP
Sbjct: 491 IKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPP 525


>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 242 FTGGRTSYESARVGTTTPPISTVKQ 316
           F GG TSY ++  G+TTP +S  K+
Sbjct: 835 FRGGNTSYVTSHSGSTTPKLSRQKE 859


>01_01_0242 +
           1997427-1997429,1997893-1998580,2000199-2000234,
           2000786-2001114,2001178-2001855
          Length = 577

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 120 PGGLSSFTRTGGRARAQPGGVGFSNNCPS 34
           PG     + +GG+      G+GFS  CPS
Sbjct: 191 PGDCQKCSASGGQCEYSSDGMGFSCKCPS 219


>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
          Length = 739

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  GRARAQPGGVGFSNNCPSAXEGDLTIQE 4
           G  R +PGG  F  NCP+  +G+ TI +
Sbjct: 315 GECRNKPGG--FDCNCPAGSKGNATIPD 340


>05_06_0150 - 25994562-25995980
          Length = 472

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 113 AFPVSLGQVGEQGLSQEGWDFLTTARAPPKE 21
           AFP +  +    GL   G  FL T R+PP+E
Sbjct: 278 AFPAAQLKELAHGLESSGHRFLWTVRSPPEE 308


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 362 SIVTTAAPPFKPKRITA 312
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,296
Number of Sequences: 37544
Number of extensions: 351713
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)