Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2394
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   5.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.6  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   6.6  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 170  KYITKIDNLCLIFIEYMYIFN 232
            KY+T     CL+  EYM+I+N
Sbjct: 1210 KYLTSYFESCLLSTEYMHIYN 1230


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 259 FCFFFITINIKNIHIFYKYKAEIIYLRNILRIEIVFYFFAQIKLKGRVFFRFLF 98
           F  FF++ +     +F+  +  I+Y  +   +  +F+FF  +     VF  FLF
Sbjct: 122 FLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCV----CVFLSFLF 171


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 581 LAESAVISNHQRSMSFSPDLLSWTYF 658
           + ES ++ N     S+SPDL+S+  F
Sbjct: 907 ITESPIVPNQAAQKSYSPDLMSYFGF 932


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 303 LLRRRRLPSGALYARRHALCH 365
           +L+RRR  +G+ +A  +A+CH
Sbjct: 499 VLQRRRWLNGSFFAAAYAICH 519


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 643 EKIRRETHRPLMITDDSTLRKP*RFGSCNTSSSDAKPEQ 527
           E+++R+   PL    +++ ++  +  +C TS SD  P+Q
Sbjct: 28  EEVKRDIQNPLSYKTETSDKELCQTAACATSCSDWYPQQ 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,342
Number of Sequences: 5004
Number of extensions: 60161
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)