Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2391
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.2  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   5.1  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   6.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   6.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   9.0  

>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 86  KINIFGVLFFISRKTSRNFALRFRTVLLSS 175
           ++NI G    +  KTS N +  FRTVLL++
Sbjct: 239 RVNIVGQYRSMGSKTSGNTSATFRTVLLAN 268


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 63  LFCIFCILTAAGRTHVAKSRP 1
           +FC FCIL+A G T   +  P
Sbjct: 224 IFCNFCILSALGTTAATQKCP 244


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = -3

Query: 613 AILRNQKLLVLKQRNQYQYEI 551
           ++LRN+K ++LK+RNQ + ++
Sbjct: 217 SVLRNKKSILLKKRNQDETQL 237


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 91  YFNCIIDKRFILYFLYS 41
           Y  C+ +K+ IL FLYS
Sbjct: 297 YLTCVANKQLILVFLYS 313


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 238 NFHREPAFPGQNKNTNNN 185
           NF R+P FP  N+N  NN
Sbjct: 779 NFCRKPIFPFSNRNECNN 796


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 2   GRDLATCVLPAAVRIQKIQNKSFVNNT 82
           G+ LA C L   VRI + Q K+F + T
Sbjct: 74  GQVLAVCSLDRGVRIYEEQKKNFESKT 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,372
Number of Sequences: 5004
Number of extensions: 44796
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)