Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2391
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0124 + 12734846-12735356,12735449-12736041                       28   5.3  
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767...    27   9.2  

>01_03_0124 + 12734846-12735356,12735449-12736041
          Length = 367

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 462 SVVGFCFSRRLLDDKYLKIRQSWALSDW-ELGTIFLA 355
           ++VG+C    +  DKY   + SW+ SDW E G ++LA
Sbjct: 313 TIVGYC--ENIGGDKYWIAKNSWS-SDWGEQGYVYLA 346


>11_02_0042 -
           7672565-7672729,7672902-7672977,7673409-7674132,
           7674684-7674708,7675041-7675486,7676643-7676862,
           7677609-7678459,7678697-7679555
          Length = 1121

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 336 KKKIQNKINPRNYVEIVSQRYCVRSLN 256
           ++ +  K  PR++ E+V Q + V+SLN
Sbjct: 334 QRSLSQKYRPRSFNELVGQSFVVQSLN 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,635,968
Number of Sequences: 37544
Number of extensions: 230080
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)