Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2390
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 1.9
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 27 2.5
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 27 2.5
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 27 3.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.3
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 5.8
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 7.7
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 25 7.7
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.7
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 423 DGPELYNPIRSSDIMKSQPNRLQIRNVLKF*RATHVSWTERFSGYE 560
D ELY+ S + S + L + ++L+ + V W +RF Y+
Sbjct: 1163 DYTELYSEFDSIYLNSSTSDYLSLNSILRVLQGKMVKWEQRFLDYQ 1208
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 78 VICDNLKYTEGFTSGTQRVIHSVYATTRSILDTTNPNTFCSRVSRDE 218
VICD L Y +GF S+Y TT ++ P C + + ++
Sbjct: 83 VICDALNYIKGFRYQLYCESKSMY-TTHCVIHVAVPQDLCRKFNSNK 128
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 339 LQIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 488
+QI E +F S+ I T + VP GP++ + IR +I + P RL
Sbjct: 209 VQIQQECTKFGKSSR--IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRL 256
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = -3
Query: 649 LEKKSFRKKLFSELNYLVSQKTAERTSGYSSYPLKRSVQLT 527
+E++ +R+ ++ + + S +A + +GYSSYP++ S QL+
Sbjct: 196 VEEEVYRRPPYTLASEVPSSASAYQ-AGYSSYPVRSSPQLS 235
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +3
Query: 219 LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRF 368
L FF+ + RGG+ F ++ +QN +A + + D +L +
Sbjct: 3826 LNFFETCSDSNERGGLESLFFKTHASNIQNFCTEVLANTHCEEDCLKLLY 3875
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 649 LEKKSFRKKLF-SELNYLVSQKTAERTSGYSSYPLKRSVQLTCVALQNFKTFL 494
LE K +LF ELN L Q E +YP + +Q C AL + +FL
Sbjct: 209 LEAKHPEFQLFLDELNQLKPQLN-EIKEKLKTYPSSQLLQAQCTALSTYISFL 260
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 237 TNARTRRG-GVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLV 410
T RT + G L +N+ + Q+ I R P+Y+ D + L R T I +ET L+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFY-YYQDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLL 231
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 396 ETGLVASVPDGPELYNPIRSSDIMKSQ 476
E+GL+A+ + PE+ I S D +K Q
Sbjct: 488 ESGLLATFIEAPEMIPSISSPDFVKEQ 514
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 7.7
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 201 RVSRDE-LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPE--YLQIDTEELRFR 371
R+S E +RF+ T ARTR G Q F+N +Q I V+ E ++Q D + F
Sbjct: 511 RISDPESIRFYSSTTARTRSAG---QPFDNE---VQTYIDTDVSSENPFIQFDHIDSSFV 564
Query: 372 NSATCIIDETGLVAS 416
AT I +T ++ S
Sbjct: 565 QLATYI--DTSMIPS 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,778
Number of Sequences: 5004
Number of extensions: 56542
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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