Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2390
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.3  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 80  YMRQSKIYRRFHKRHATRYTQRLRNYKKHSRHHKPEHVLFAC 205
           +MR     + +H  H  R   ++ N ++H R H  E   +AC
Sbjct: 28  HMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERP-YAC 68


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 206 VARRIAFFRRDQRPNASRWCWRSI 277
           V  R+A++R D   N   W W  +
Sbjct: 192 VEHRVAYWREDIGINLHHWHWHLV 215


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 235 TSKKRNSSRDTREQNVF 185
           T++KRNS    REQN +
Sbjct: 33  TNRKRNSRSREREQNSY 49


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 235 TSKKRNSSRDTREQNVF 185
           T++KRNS    REQN +
Sbjct: 33  TNRKRNSRSREREQNSY 49


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 274 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 310


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 472 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 362
           + + S+ L+G      SG   T  V+ ++ + +FLNL
Sbjct: 274 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 310


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 606 FNSENNFLRNDFFSRAN 656
           F  ENN+  N F+S++N
Sbjct: 132 FPQENNYNDNYFYSKSN 148


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 574 YVPLFFGIPNNL 609
           +VPL+FG  NN+
Sbjct: 864 FVPLYFGTGNNV 875


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,161
Number of Sequences: 438
Number of extensions: 4153
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)