Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2387
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    26   0.23 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 348 TGRSRSTVKEYHRLIKNKTLSQKKIFRNNCWSDQYNRLGKKSF 476
           T R RS   +    + NKT+     + NN +++ YN     ++
Sbjct: 304 TERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNY 346


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 514 WLYILFGSSWLW 549
           WL + +GS+W W
Sbjct: 164 WLSVFWGSAWQW 175


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 348 TGRSRSTVKEYHRLIKNKTLSQKKIFRNNCWSDQYNRLGKKSF 476
           T R RS   +    + NKT+     ++ N  ++ YN   KK +
Sbjct: 71  TERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 348 TGRSRSTVKEYHRLIKNKTLSQKKIFRNNCWSDQYNRLGKKSF 476
           T R RS   +    + NKT+     ++ N  ++ YN   KK +
Sbjct: 71  TERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 348 TGRSRSTVKEYHRLIKNKTLSQKKIFRNNCWSDQYNRLGKKSF 476
           T R RS   +    + NKT+     ++ N  ++ YN   KK +
Sbjct: 71  TERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 348 TGRSRSTVKEYHRLIKNKTLSQKKIFRNNCWSDQYNRLGKKSF 476
           T R RS   +    + N+T+     ++ N  ++ YN   KK +
Sbjct: 71  TERERSREPKIISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLY 113


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 508 TLWLYILFGSSWLW 549
           T W+ +  GS+W W
Sbjct: 162 TNWVGVFGGSAWSW 175


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 402 TLSQKKIFRNNCWSDQYNRLGKKSF 476
           +LS K I  NN +   YN   KK +
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNCKKLY 108


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 508 TLWLYILFGSSWLW 549
           T W+ +  GS+W W
Sbjct: 162 TNWVGVFGGSAWSW 175


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 458 VGEKVFSHYSMYELVIKLFG 517
           +G+K FSHY    + +K  G
Sbjct: 273 LGKKEFSHYEHQNVFVKNSG 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,418
Number of Sequences: 438
Number of extensions: 3111
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)