Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2384
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 35 0.010
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 33 0.030
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 32 0.090
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.48
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.84
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.84
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 1.9
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 27 2.6
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 2.6
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 3.4
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 27 3.4
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 26 4.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.9
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 5.9
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 25 7.9
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.9
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 7.9
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 7.9
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 7.9
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 7.9
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 35.1 bits (77), Expect = 0.010
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Frame = +2
Query: 197 DNVIEFADNKVQSIENDHVNTAHVIQAKNYLTVQSQLSCEHGNSTPTFE-------SKCL 355
D+ A+N + ++ND T+ ++ + + S+L+ + GNS P E S L
Sbjct: 91 DSEASLAENDLHPLDNDSTRTSKTLKNSSEVLTASKLT-DEGNSKPLLEEGEVAVSSPIL 149
Query: 356 FDLKEDAMKMSKNKPQGCNLKDSLKQLNISEIQTDVDKITNQNNSDISNTMNNT 517
D K+ M ++K+ NL + + + + ++ + + NS+ SN N +
Sbjct: 150 LDSKDVIMGVTKSSK---NLVEDAHKSKKASTNSSINNMVSTVNSENSNVNNGS 200
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 33.5 bits (73), Expect = 0.030
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 26 TSTKVCEDEPMIVEETKCHRDDTNNVSNAEDIQEKVL--QETNIILKSEMEEQLHLNIFD 199
TST + + +++ KC +D+ N++N E EK L Q ++++ + E +
Sbjct: 461 TSTAIRDIAIKFLDDAKCETEDSTNLTNREGEAEKTLNTQPWKNLIENFISELQAEEEEN 520
Query: 200 NVIEFADNKVQSIENDHVN 256
N+ E++D + S+ ND N
Sbjct: 521 NITEWSD--IISVRNDEEN 537
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 31.9 bits (69), Expect = 0.090
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Frame = +2
Query: 59 IVEETKCHRDDTNNVSNAEDIQEKVLQETNIILKSEMEEQLHLNIFDNVIEFADNKVQSI 238
++E+T R+ + + +D+ K LQ+T +++ +E + + N + K +
Sbjct: 194 LMEDTYSPRESPSKIQRLQDVLLKQLQDTRLLISQVIEAENSEDFSSNSLFI---KREDD 250
Query: 239 ENDHVNTAHVIQAKNYLTVQSQLSCEHGNSTPTFESKCLFDLKEDAMKMSKNKPQGC--- 409
+ H+ ++H I+ K Y+ + ++LS G E + +K+ K K P C
Sbjct: 251 DGKHI-SSHAIE-KLYMAL-TKLS-RLGACDKLLEEGSIILVKQILEKELKELPVACYSI 306
Query: 410 -NLKDSLKQ 433
NL DSL Q
Sbjct: 307 INLHDSLTQ 315
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 29.5 bits (63), Expect = 0.48
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 410 NLKDSLKQLNISEIQTDVDKITNQNNS 490
+L +S+ + NI +QTD+D + Q+NS
Sbjct: 397 SLSESVNEQNIKSLQTDIDNLCLQSNS 423
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.84
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Frame = +2
Query: 170 EEQLHLNIFDNVIEF-ADNKVQSIENDHVNT-AHVIQAKNYLTVQSQLSCEHGNSTPTFE 343
EEQ++L + + + + K EN+ +T + A LT ++ S E
Sbjct: 46 EEQINLQLVYAINDLRSKTKELKAENEKEDTFLNSFNASGDLTANKKIQLRE-QSRKLEE 104
Query: 344 SKCLFDLKEDAMKMSKNKPQGCNLKDSLKQLNISEIQTDVDKITNQNNSDISNTM 508
S + K +K + + + + K L +L+ ++QT+V+ + +QNN +I M
Sbjct: 105 SLLSYHKK---VKEMEKQHRSASSKLELAKLSAQQLQTNVNVLRSQNNPEILQDM 156
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 28.7 bits (61), Expect = 0.84
Identities = 18/98 (18%), Positives = 47/98 (47%)
Frame = +2
Query: 110 AEDIQEKVLQETNIILKSEMEEQLHLNIFDNVIEFADNKVQSIENDHVNTAHVIQAKNYL 289
A D+ + ++ N ++ M+ + D+ + +++ ++ + + T + ++A +
Sbjct: 235 ALDVHDATREQVNDREETNMDLTIQFQEADSFLSHSES-IKGLSSSEQGTVYSLKASHDP 293
Query: 290 TVQSQLSCEHGNSTPTFESKCLFDLKEDAMKMSKNKPQ 403
+ Q+QLS + +S+PT F + S+NK +
Sbjct: 294 SNQTQLSSPNKSSSPTSIEISDFSKNNENHDQSENKEE 331
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 634 CRIIRTISGFMK*VTRHFHFHTIVCSSFALCTSF 533
CR + +S F+K + + F FHTI S L F
Sbjct: 901 CRYLHELSEFIKKIPKEFIFHTICKLSKGLIPCF 934
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 104 SNAEDIQEKVLQETNIILKSEMEEQL 181
+ DI++ V+QE ++LK+E ++L
Sbjct: 38 AQVRDIRQNVIQEIGVVLKNEKNDEL 63
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 341 ESKCLFDLKEDAMKMSKNKPQGCNLKDSLK--QLNISEIQTDVDKITNQNNSDISNTMNN 514
ESK L DLKE+ K+S + L DS+K + + + + ++++ + N ++ +
Sbjct: 378 ESK-LTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARIELERTQREGNYARASELQY 436
Query: 515 TLFLESKAGAQSETRTDDSMKVKM 586
+ E + E +T + K M
Sbjct: 437 AIIPELERSVPKEEKTLEEKKPSM 460
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 247 IIFNRLDFVISKFYYVIKNIQMQLFFHFRL*YYICLLQDFFLYIFCIRHIVGVISMTF-S 71
++F+ +D + S F + + + H Y L+D F + ++ I + S+ S
Sbjct: 211 LLFHSIDKITSLFIHFFPPLVLHTIVHLTNKSY---LKDRFPAVLKVKKIDLLSSVEIAS 267
Query: 70 FFYNHWFIFTYF 35
FFY W I+ YF
Sbjct: 268 FFYALWQIWYYF 279
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 115 FCIRHIVGVISMTFSFFYNHWFIFTYFC 32
+ +++IV I+M + +YN + I FC
Sbjct: 212 YLVQYIVAYIAMLLAMYYNGYVILFLFC 239
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 155 LKSEMEEQLHLNIFDNVIEFADNKVQSIENDHVNTAHVIQAKNYLTVQSQLSCEHGNST 331
+KS + EQL IF + FA N S +H N ++ +K + +CE+ ++T
Sbjct: 649 IKSFVLEQL---IFQALFSFAINWTPSFFLNHSNFENIALSKETFNFGGEANCENTDTT 704
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 188 NIFDNVIEFADNKVQSIENDHVNTAHVI 271
N DNV E ADN QS DHV+ V+
Sbjct: 1424 NSSDNVEENADNLFQSSVLDHVHFKSVV 1451
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 332 PTFESKCLFDLKEDAMKMSKNKPQGCNLKDSLKQLNI-SEIQTDVDKIT---NQNNSDIS 499
PT D ++ +K SK K + + L +L+ +E + D Q+NSD+S
Sbjct: 273 PTITGSEQSDYRQIKIKKSKKKKSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSDLS 332
Query: 500 NTMNNTLFLESK 535
++ +F E K
Sbjct: 333 VEQDSAIFKEQK 344
>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 123
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +2
Query: 11 DSKDLTSTKVCEDEPMIVEETKCHRDDTNNVSNAEDIQEKVLQETNIILKSEMEE 175
++KD + ++ E+ V++T DT+ A+D +K+ +E + ++ +EE
Sbjct: 54 ENKDKSPQEMAENAKQSVKQTAKDAKDTDYQQKAKDAGKKIKEEFSQRSENVLEE 108
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 399 GLFFDIFIASSFKSKRHFDSKVGVLFP 319
G+++D F S + FDS VG+L P
Sbjct: 257 GIYYDAFAESYEDLRNFFDSVVGLLDP 283
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/86 (19%), Positives = 39/86 (45%)
Frame = +2
Query: 89 DTNNVSNAEDIQEKVLQETNIILKSEMEEQLHLNIFDNVIEFADNKVQSIENDHVNTAHV 268
D +++ I + + N +LKS+M E + + EF ++++S EN+H +
Sbjct: 789 DLGRIASNYYINYQTVSTLNNLLKSKMSEADIIALLSQCSEF--SQIKSRENEHRELESL 846
Query: 269 IQAKNYLTVQSQLSCEHGNSTPTFES 346
++ + ++ +S G +S
Sbjct: 847 MENSSPCQLRDSISNTSGKVNVILQS 872
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +2
Query: 428 KQLNISEIQTDVDK---ITNQNNSDISNTMNNTLF---LESKAGAQSET 556
K L + ++ D+D+ ITN++ SN + T+F + GA +E+
Sbjct: 877 KALGLDNVEIDIDEPKPITNEDIKQASNFLRGTIFEGLADESTGALAES 925
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 567 SSVLVSLCAPALLSKNKVLFIV 502
S L++LC P+L +KN +L ++
Sbjct: 449 SPELINLCDPSLRTKNTILLLI 470
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 474 VILSTSVCISEMFSCFKLSFKLQPCGLFFDIFIASSF 364
+I S S + ++ + F LSF + P F +F+A SF
Sbjct: 338 IIASFSSLLKKLLTLFVLSFFVYPLVQEFCLFLACSF 374
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.9
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Frame = +2
Query: 341 ESKCLFDLKEDAMKMSKNKPQGCNLKDSLKQLNISEIQTDVDKITNQN--------NSDI 496
+S L +KE+ K+S NK + + ++ L++ + DV + NQN ++ I
Sbjct: 64 KSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVI 123
Query: 497 SNTMNNTLFLESKAGAQ-SETRTDDSMKVKMSSYLFHKPRNRSYDPTQLCRNPDFNKKLK 673
+ T+FL + E D + V SYL YD D K +
Sbjct: 124 KTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVD-EKPTE 182
Query: 674 RLTD 685
R +D
Sbjct: 183 RYSD 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,033
Number of Sequences: 5004
Number of extensions: 58079
Number of successful extensions: 210
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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