Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2384
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 31 1.1
05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727 30 1.5
06_03_0548 + 22004338-22006746 30 2.0
09_02_0023 + 3076899-3077066,3077144-3077203,3077561-3077686,307... 29 3.5
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 29 4.6
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079... 29 4.6
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 28 8.1
03_03_0101 - 14431327-14432390,14432599-14432731 28 8.1
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 28 8.1
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = +2
Query: 83 RDDTNNVSNAEDIQEKVLQETNIILKSEMEE----QLHLNIFDNVIEFADNKVQSIENDH 250
+D N +S + +E+ ++E + L S+ E+ QL N + +E+AD+K++ +E +
Sbjct: 262 QDKVNLLSQEVNAKEEAIRELSSSLSSKEEDYQKLQLIYNETEASLEYADSKIEQLEEGY 321
Query: 251 VNTAHVIQAK 280
T + +K
Sbjct: 322 SATKDDLNSK 331
>05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727
Length = 489
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 188 NIFDNVIEFADNKVQSIENDHVNTAHVIQAKNYLTVQSQLSCEHGNSTPTFESKCLF-DL 364
N+FDN ++ D + E+ + +++NY + S+ S E ++ T + +F +
Sbjct: 363 NVFDNDVDAPDEHPRRFESMRSEKSRSDRSRNYTSRGSRSSIEKPRNSATASGRSVFRES 422
Query: 365 KEDAMKMSKNKPQGCNLKD 421
++D + ++ G +LK+
Sbjct: 423 EDDELDTEDDELWGPDLKE 441
>06_03_0548 + 22004338-22006746
Length = 802
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +2
Query: 92 TNNVS--NAEDIQEKVLQETNIILKSE 166
TNNVS NAE +Q K+L N+I+KS+
Sbjct: 112 TNNVSSSNAEQVQAKLLNTGNLIVKSK 138
>09_02_0023 +
3076899-3077066,3077144-3077203,3077561-3077686,
3077757-3077903,3077940-3078431
Length = 330
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 356 FDLKEDAMKMSKNKPQGCNLKDSLKQLNI---SEIQTDVDKITNQNN--SDISNTMNNTL 520
FD+KE + N P+G + D ++ L + + +D + Q+ D+SN + +
Sbjct: 126 FDVKEFLNEGEGNSPEGAQITDEVRALLVEIADRLNASLDTLEIQDRIPDDLSNKIASAA 185
Query: 521 FLE 529
FLE
Sbjct: 186 FLE 188
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Frame = +2
Query: 44 EDEPMIVEETKCH-----RDDTNNV-SNAEDIQEKVLQE-TNIILKSEMEE 175
E EP ++ +C RDD NN N+E Q+++++E NI +++E EE
Sbjct: 314 EKEPSSMDNHRCTSVQGTRDDDNNPNDNSETNQQELIEEDINIFVENEQEE 364
>02_05_0449 -
29107310-29107377,29107732-29107777,29107860-29107934,
29108053-29108122,29108313-29108408,29108728-29108914,
29109001-29109169,29109614-29109646,29109731-29109841,
29110070-29111256,29112380-29112448,29114417-29114975,
29115455-29115589,29115714-29115896
Length = 995
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 410 NLKDSLKQLNISEIQTDVDKITNQNNSDISNTMNNTLFLESKAGAQSETRTDDSMKVKMS 589
NL L + +TDV K T D T+NNTL+L S + D + K++
Sbjct: 216 NLNGELFFAGVFVEETDVAKFTICTIDD-PRTLNNTLYLRPSGNVYSMNKLVDLWEKKIN 274
Query: 590 SYL 598
+L
Sbjct: 275 KFL 277
>10_08_0558 + 18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 27.9 bits (59), Expect = 8.1
Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 4/164 (2%)
Frame = +2
Query: 11 DSKDLTSTKVCEDEPMIVEETKCHRDDTNNVSNAEDIQEKV-LQETNIILKSEMEEQLHL 187
D +++ KV +++ I E + NN + AE +QE+ + + + EQL +
Sbjct: 626 DIQEVMRAKVEQEQRAIKAEESLRKARWNNATTAERLQEEFKMLSSQVSSAFSANEQLLM 685
Query: 188 NIFDNVIEFADNK--VQSIENDHVNTAHVIQAKNYLTVQSQLSCEHGNSTPTFESKCLFD 361
E K ++ + IQ ++ + VQ L+ S T + + +
Sbjct: 686 QARKEAAELQLQKGQLEELLQKAQEDLGSIQEQHRVKVQQLLTLVDFKSKET--DRLVME 743
Query: 362 LKEDAMKMSKNKPQGCN-LKDSLKQLNISEIQTDVDKITNQNNS 490
LK + + K CN K S+ I +++ ++ ++N+ ++
Sbjct: 744 LKSKSDEFQNQK--RCNEAKLSVLSEEIDQLKAKIENLSNERDN 785
>03_03_0101 - 14431327-14432390,14432599-14432731
Length = 398
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 530 SKAGAQSETRTDDSMKVKMSSYLFHKPRNRSYDP 631
S+ AQ RTD+ +K +SY+ K R+R DP
Sbjct: 123 SQIAAQLPGRTDNEVKNFWNSYIKKKLRDRGIDP 156
>01_06_0893 -
32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = +2
Query: 242 NDHVNTAHVIQAKNYLTVQSQLSCEHGNSTPTFESKCLFDLKEDAMKMSKNKPQGCNLKD 421
+D+++ + IQ K+ LSC ++T + +L E ++S+N+ G
Sbjct: 550 SDNLDGSIEIQKKHSTMENKSLSCSSESATMNNAQGKINNLLESKDQISRNR--GKARSR 607
Query: 422 SLKQLNISEIQTDVDKITNQNNSDISNT 505
S +NI+E DVD + + S NT
Sbjct: 608 STSNMNITE---DVDDLPSSTTSSDRNT 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,456
Number of Sequences: 37544
Number of extensions: 287353
Number of successful extensions: 842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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