Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2381
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.7  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    26   4.7  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   6.2  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   8.2  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 590 GGTVVVVPTRADSQEVLPPV--ITQIIILRV*FLLHDVIPSPWKSIVNI 450
           G   ++ P +   +  L  V  +T  I+L + F+LHD   S W+S+V I
Sbjct: 198 GSVCLIKPFKIPRRHFLRDVAFLTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 543 DLLGVRTGRYHHHSTTTVMRFGLKGGVARCNDTETLELIS 662
           DLLG   GR +    T  +  G  G VARC D +T ++++
Sbjct: 120 DLLGTDEGRKYLILDT--LGHGTFGQVARCQDLKTQQIVA 157


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 45  WLCPWHF*SPWVTVTTHHQVS 107
           WL P HF + + T+ TH +VS
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVS 281


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 38  NGLALPLAFLKSMGDGNHSSSGEPF 112
           N LA  LAFL S GDG+     E F
Sbjct: 108 NQLARRLAFLGSFGDGDCDGCNEAF 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,274
Number of Sequences: 5004
Number of extensions: 68161
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)