Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2381
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    31   0.70 
05_03_0527 - 15025031-15025993                                         31   1.2  
05_03_0524 + 14994170-14995132                                         31   1.2  
03_06_0680 - 35497868-35497884,35498058-35501961                       29   2.8  
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022...    29   3.7  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +1

Query: 379 IERCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 477
           I RCTGV I   G N   +I T      DFHGE
Sbjct: 157 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>05_03_0527 - 15025031-15025993
          Length = 320

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 673 PPPRDISSKVSVSLQRATPPFKPKRITVVVLWW 575
           PPP     + S  L  ++PPFKP R  V+V WW
Sbjct: 119 PPP---VPRCSTPLSPSSPPFKPSR--VIVRWW 146


>05_03_0524 + 14994170-14995132
          Length = 320

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 673 PPPRDISSKVSVSLQRATPPFKPKRITVVVLWW 575
           PPP     + S  L  ++PPFKP R  V+V WW
Sbjct: 119 PPP---VPRCSTPLSPSSPPFKPSR--VIVRWW 146


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 339 LLETTTTSDDDVVIQYHCCGQILCALRVNRHFSWFVVSL 223
           +LE  T ++   V++ HCCG   C   +N+   W++V L
Sbjct: 753 VLEGLTPNEGLKVLRIHCCGSSTCPTWMNK--LWYMVEL 789


>12_02_1229 +
           27197464-27197481,27200438-27201583,27201935-27202201,
           27202849-27202882,27202997-27203100,27203174-27203308,
           27203367-27203511,27203864-27203880
          Length = 621

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
 Frame = -1

Query: 315 DDDVVIQYHCCGQILCALRVNRHFS--WFVVSLVHS*KQPPTTDWTWXXXXXXXXVSPHI 142
           DDD  I+ HC G +L    +    +  W  +  V      P   +           SPH 
Sbjct: 50  DDDATIEVHCNGLLLLDRHIVNPATRQWMRLPPVPPYASLPNIMYGDRGLVFDPAASPHY 109

Query: 141 DFFYCP----SRQANGSPDDEWLPSP 76
           D  + P     R    S  D+W PSP
Sbjct: 110 DVLWMPYLILHRLPAASLSDQWPPSP 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,728,632
Number of Sequences: 37544
Number of extensions: 515444
Number of successful extensions: 1092
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)