Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2377
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    28   0.98 
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    26   3.0  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   3.0  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   5.2  
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    25   9.1  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.1  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 494  ILEPIELISQDGGGIYVVDVYKLQYPLNIRWAVSSSPNL 378
            + +PI +I  DG   Y   +    YP   RWAV+++ N+
Sbjct: 900  LTQPISIIKTDGDE-YKAKMEINDYPQQARWAVTNNTNI 937


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 GTYKYIFR*MLYVPLCEEIMIVHILRNVYYIFKQRLYIFVRKA 362
           G  K+I + + Y+P      + + + N ++  KQ + IF +KA
Sbjct: 249 GDPKFIAKYLEYIPSAANYPLYYQIENTFFPPKQSMNIFYQKA 291


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 396 ELVPQFKE-QKKMLFERKYINVV*ICNK 316
           ++ PQ  + Q K+LF  KY+NVV  C K
Sbjct: 342 QVPPQLLDLQNKVLFAGKYLNVVLECRK 369


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -3

Query: 503 IVTILEPIELISQDGG----GIYVVDVYKLQYPLNIRWAVSSS 387
           I   +EP  LIS  G     G+YV  V  L  P+++ W VS S
Sbjct: 76  IYKYIEPHSLISIPGIFVFLGLYVPFVVTLLIPIDVTWDVSLS 118


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 266 QHSSKYIFICT*LGLKSSYLHNFSILQ 186
           QH + + FIC    LK S+   +S LQ
Sbjct: 36  QHRNTFAFICDVFWLKLSFTLRYSTLQ 62


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 391  RPPI*GTKKNAFRTKIYKR 335
            RPPI  TK+N  R +I +R
Sbjct: 1856 RPPIFSTKQNRLRKRIVRR 1874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,376
Number of Sequences: 5004
Number of extensions: 42070
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)