Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2377
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0053 - 12881524-12881592,12882481-12882546,12882647-128828...    27   7.0  

>11_04_0053 -
           12881524-12881592,12882481-12882546,12882647-12882808,
           12883123-12883266,12883975-12884145,12884265-12884333,
           12884899-12885054,12887398-12887673
          Length = 370

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 437 HLQRKCPPHLEI*ALWAQ 490
           HL +KCPPH+++  L  Q
Sbjct: 159 HLTKKCPPHVQVVGLLCQ 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,263
Number of Sequences: 37544
Number of extensions: 254410
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)