Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2376
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66514-3|CAA91343.1|  854|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U97006-6|AAL08026.1|  148|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AY342006-1|AAQ22724.1|  854|Caenorhabditis elegans TRP-3 channel...    27   7.8  
AJ276029-1|CAC81656.1|  854|Caenorhabditis elegans TRP homologou...    27   7.8  

>Z66514-3|CAA91343.1|  854|Caenorhabditis elegans Hypothetical
           protein K01A11.4 protein.
          Length = 854

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 237 KFLRLCILISYLLTIN*FLY*VSISFLLPLNLFWYLTTPYL 359
           +FLR CIL+ +L+ ++ F+     +  +PL  F    T YL
Sbjct: 329 RFLRACILMPFLVMLHAFMPTKGTTMCVPLARFIAHITMYL 369


>U97006-6|AAL08026.1|  148|Caenorhabditis elegans Hypothetical
           protein C13F10.1a protein.
          Length = 148

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +3

Query: 51  SKFLIISMRLLLPFLGRHLAPM*SQSLNRQVSDR*YAHAFIRLYVFEE*LIVHSLFLDLC 230
           SKF ++S RL+  +  RHL P    +L++   ++ Y +A + + V    +I  SL L L 
Sbjct: 69  SKFTLLSPRLVGRYRARHLFP--KVNLSKMQIEKPYDYAALMIRVSAGFVIFISLSLILL 126

Query: 231 MI 236
           ++
Sbjct: 127 VV 128


>AY342006-1|AAQ22724.1|  854|Caenorhabditis elegans TRP-3 channel
           protein protein.
          Length = 854

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 237 KFLRLCILISYLLTIN*FLY*VSISFLLPLNLFWYLTTPYL 359
           +FLR CIL+ +L+ ++ F+     +  +PL  F    T YL
Sbjct: 329 RFLRACILMPFLVMLHAFMPTKGTTMCVPLARFIAHITMYL 369


>AJ276029-1|CAC81656.1|  854|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 854

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 237 KFLRLCILISYLLTIN*FLY*VSISFLLPLNLFWYLTTPYL 359
           +FLR CIL+ +L+ ++ F+     +  +PL  F    T YL
Sbjct: 329 RFLRACILMPFLVMLHAFMPTKGTTMCVPLARFIAHITMYL 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,135
Number of Sequences: 27780
Number of extensions: 157316
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)