Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2375
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing...    99   8e-21
AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens ...   100   1e-20
AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product pr...    67   5e-11

>BC000448-1|AAH00448.1|  353|Homo sapiens THUMP domain containing 1
           protein.
          Length = 353

 Score =   99 bits (238), Expect = 8e-21
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
 Frame = +3

Query: 180 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 350
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAA 98

Query: 351 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 530
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 99  --------------LKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 531 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKTF 656
            I++D+  T+ +KTR ++R+LPI  TCKA L D M+   +TF
Sbjct: 143 HILQDMYKTKKKKTRVILRMLPISGTCKAFLED-MKKYAETF 183


>AK000281-1|BAA91050.1|  353|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20274 fis, clone HEP02123. ).
          Length = 353

 Score = 99.5 bits (237), Expect = 1e-20
 Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
 Frame = +3

Query: 180 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLY-PD--LDVEQVPPSAVPXXXXXXXX 350
           LEPG +G   TCN  E+ CV+E Y+LLNEY   +Y P+   D +Q P  +          
Sbjct: 39  LEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQRPSGSEGEDDDAEAA 98

Query: 351 XXXXXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTT 530
                         L++EV  IK +++  +R +RFQ VE+GA+N +F++T    PE+L  
Sbjct: 99  --------------LKKEVGDIKASTE--MRLRRFQSVESGANNVVFIRTLGIEPEKLVH 142

Query: 531 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKTF 656
            I++D+  T+ +KTR ++R+LPI  TCKA L D M+   +TF
Sbjct: 143 HILQDMYKTKKKKTRVILRMLPISGTCKAFLED-MKKYAETF 183


>AC004381-1|AAC31666.1|  242|Homo sapiens Unknown gene product
           protein.
          Length = 242

 Score = 67.3 bits (157), Expect = 5e-11
 Identities = 33/73 (45%), Positives = 51/73 (69%)
 Frame = +3

Query: 438 LRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIATRIQKTRHVMRLLPIMITCKA 617
           +R +RFQ VE+GA+N +F++T    PE+L   I++D+  T+ +KTR ++R+LPI  TCKA
Sbjct: 1   MRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKA 60

Query: 618 NLPDIMESAGKTF 656
            L D M+   +TF
Sbjct: 61  FLED-MKKYAETF 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,422,569
Number of Sequences: 237096
Number of extensions: 1763743
Number of successful extensions: 2883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2883
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)