Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2375
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical ...    46   4e-05
AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical ...    31   1.1  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        29   4.3  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.3  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    29   4.3  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    29   4.3  
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ...    28   5.7  
U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine rece...    28   7.6  

>AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical
           protein W02G9.3 protein.
          Length = 345

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 2/155 (1%)
 Frame = +3

Query: 180 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXXX 359
           +E G  G F +C   EK  ++E Y++++E      P   +    P A P           
Sbjct: 97  VEAGVTGLFFSCEGHEKQALQEAYSIIDELLED--PANGISLKAPEAAPQGSEAPGNPAE 154

Query: 360 XXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVE--TGASNCIFVKTNLPSPEELTTA 533
                  I D L++  D  ++    +   K  + ++  TG  NCIFV     + + L   
Sbjct: 155 AEDSDEDIADALKKACDDQRQPKPGNFVKKERRCIQRPTGVKNCIFVSVKNANIQLLAEK 214

Query: 534 IIKDLIATRIQKTRHVMRLLPIMITCKANLPDIME 638
           +++  +  +  + R + R+ P+  T   +L  + E
Sbjct: 215 MVE--LTQKAPRCRFLQRVYPVEHTLAVDLSKMNE 247


>AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical
           protein K02F6.6 protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 417 KKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKD 545
           +K ++K  + +R  V++T ASNCIF+  + P   +L    ++D
Sbjct: 16  RKQTEKCKKSRRTDVLQTDASNCIFIDRS-PKHFDLILNFLRD 57


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 707 LLKTTEKLVGSFKKYLSKSFPSAFHYVRKVCFTSNHYWKQSHHM 576
           LL  T+KL G+F K+L+   P       +V  T+ H  + S H+
Sbjct: 639 LLDATKKLCGAFGKFLNTVNPETEARRNEVFRTAGHVGETSQHL 682


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 186  PGFKGFFCTCNFREKDCVKEVYNLLNEY 269
            PGFKG  C+ N  E  C+ +    L+EY
Sbjct: 2022 PGFKGLLCSSNACENFCLHDGNCTLDEY 2049


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 707 LLKTTEKLVGSFKKYLSKSFPSAFHYVRKVCFTSNHYWKQSHHM 576
           LL  T+KL G+F K+L+   P       +V  T+ H  + S H+
Sbjct: 639 LLDATKKLCGAFGKFLNTVNPETEARRNEVFRTAGHVGETSQHL 682


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 707 LLKTTEKLVGSFKKYLSKSFPSAFHYVRKVCFTSNHYWKQSHHM 576
           LL  T+KL G+F K+L+   P       +V  T+ H  + S H+
Sbjct: 639 LLDATKKLCGAFGKFLNTVNPETEARRNEVFRTAGHVGETSQHL 682


>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
           protein Y92H12A.5 protein.
          Length = 1375

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
 Frame = -1

Query: 284 VEFTGIFVQKIIYFFDAVFFSKVTRAKEALEAGFQ-EIFVSSFP-KVKFLLFPRVTHVEC 111
           ++F  I + +  Y  DAV     TR++ A  AGF+ + +++  P + KF L   +  V  
Sbjct: 529 LDFGNIKLDEKKYLNDAVDLMTSTRSRNATSAGFRMQYYLTRQPDRYKFCLMRFLDDVNN 588

Query: 110 TESTMQSIFISMDDITDYYVTY*IELLTQQHPTFQQ 3
                +   +++  +  + +   IELL  ++PT+++
Sbjct: 589 RAEAAEKDLLTITTLPIHSILNMIELLL-RNPTWKE 623


>U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein213 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -2

Query: 682 SVLLRNTYQKVF-PALSIMSGRFALQVIIIGSSRITCLVF*IRVAIRSFIMAVVSSSGLG 506
           +V L   +QK F   L+I      L +I IG   ++CLVF    AI +  + +VSS G  
Sbjct: 233 TVELHKKFQKAFLTQLTIPILILILPIIYIG---VSCLVFYHNQAINNITVIIVSSHGFF 289

Query: 505 KLVLTKIQFDAP 470
             ++  I   AP
Sbjct: 290 STIV-MIYIHAP 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,728,963
Number of Sequences: 27780
Number of extensions: 280575
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)