Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2374
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   1.7  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    26   3.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   3.0  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   3.0  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   9.2  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   9.2  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   9.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.2  

>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 427 IINFTTKGISVENDDTHEAQQENI 356
           I+N  T+G++ + DD  E + EN+
Sbjct: 160 ILNLETQGVTEDQDDVLEGENENV 183


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 320 YFPFGSLIFE*TNVFLLCLMSVVI 391
           YF     IFE  N FL+C +S+ +
Sbjct: 21  YFSLNMAIFEINNSFLICAVSIAL 44


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = -1

Query: 460 DPDFEIRK*KPIINFTTKGISVENDDTHEAQQENIRSFKDERTEREIAKE*CESETSLNY 281
           D ++EIR+ +  ++  ++ + V  D   E + E I + K +  E+E +    E+E + +Y
Sbjct: 282 DYEYEIRQLQNRLDELSEELDVAQDLLTEKEDE-IATLKRQIEEKENSSSAFENEENSSY 340

Query: 280 FHL 272
            HL
Sbjct: 341 VHL 343


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 9   DPLNHNATPGVLLIETGAKNVTAVLSLFILDL 104
           DP+   A P  ++I +GA  V   LSL   DL
Sbjct: 18  DPIQEAAIPKSMVIRSGASEVGRSLSLLTRDL 49


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -2

Query: 204 IFTVSMTIHFGSMNDFFYCYW---TRNWSGRAGGRMVS 100
           +FT S  ++F   +D  Y YW      W+   GG  V+
Sbjct: 279 LFTPSEFLNFEYDSDLDYAYWGGPASEWASTLGGAYVN 316


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 475 YVTHRDPDFEIRK*KPIINFTTKGISVENDDTHEA-QQENIRSFKDERTEREIAKE 311
           Y+ + DP+ E+ K  P++      +  E +   ++ +++++ S   E+ E E AK+
Sbjct: 391 YIDYSDPNAEVAKPAPVVAPAAPTVEAEVNGVEDSKKRKSVES--SEKDEDEAAKK 444


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 519 YKNEVS*IRFRPYTNTSLTATQILRYENKSP**ILPRKE-SALKMTTLMRHNRKTFVHSK 343
           YK+ +S + F  Y   +LT   + R+ ++SP    P+KE S+L  +T+     K F   +
Sbjct: 33  YKSVLSKLFFIKYLMLNLTKVGLRRFWSQSPRRNAPKKELSSLLESTI---TPKAF-SKR 88

Query: 342 MREPN 328
             EPN
Sbjct: 89  TEEPN 93


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 234  ISRFALNVHIIFTVSMTIHFGSMNDFFYCYWTRNWSGRAG 115
            I R    + ++F +   +  G  N   Y +W  +W GR G
Sbjct: 1651 IHRLVFKLVVVFLLPREVASGENN---YSWWDGHWFGRKG 1687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,813
Number of Sequences: 5004
Number of extensions: 42783
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)