Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2374
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z81550-7|CAH60764.1| 581|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81550-6|CAB04481.3| 578|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z70211-6|CAH60769.1| 581|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z70211-5|CAA94160.3| 578|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF273825-1|AAG15174.1| 579|Caenorhabditis elegans nuclear recep... 28 4.8
AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine re... 28 4.8
AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical ... 27 6.3
AF039053-15|AAW88408.1| 279|Caenorhabditis elegans Serpentine r... 27 8.3
>U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical
protein F10D7.1 protein.
Length = 656
Score = 31.1 bits (67), Expect = 0.51
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 410 RGKIYYGLLFSYLKIWVAVSDVFVYGRKRI 499
RG++Y G+L +L + ++D F+Y R+ I
Sbjct: 261 RGRLYLGILAQFLHVVKLLADAFIYARRLI 290
>Z81550-7|CAH60764.1| 581|Caenorhabditis elegans Hypothetical
protein K11E4.5b protein.
Length = 581
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -1
Query: 529 RKSIQKRSLLNSFSTVHKYVTHRDPDFEIRK*KPIINFT-----TKGISVENDDTH--EA 371
R S+ KR + S H Y + P++ R + NFT G + +DD H +A
Sbjct: 267 RSSLLKRYSVRKLSLDHFYSASKHPEYCARGEFVMNNFTFVPADRTGFELPDDDPHQIQA 326
Query: 370 QQENIRSF 347
++E+ R+F
Sbjct: 327 KREHCRTF 334
>Z81550-6|CAB04481.3| 578|Caenorhabditis elegans Hypothetical
protein K11E4.5a protein.
Length = 578
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -1
Query: 529 RKSIQKRSLLNSFSTVHKYVTHRDPDFEIRK*KPIINFT-----TKGISVENDDTH--EA 371
R S+ KR + S H Y + P++ R + NFT G + +DD H +A
Sbjct: 264 RSSLLKRYSVRKLSLDHFYSASKHPEYCARGEFVMNNFTFVPADRTGFELPDDDPHQIQA 323
Query: 370 QQENIRSF 347
++E+ R+F
Sbjct: 324 KREHCRTF 331
>Z70211-6|CAH60769.1| 581|Caenorhabditis elegans Hypothetical
protein K11E4.5b protein.
Length = 581
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -1
Query: 529 RKSIQKRSLLNSFSTVHKYVTHRDPDFEIRK*KPIINFT-----TKGISVENDDTH--EA 371
R S+ KR + S H Y + P++ R + NFT G + +DD H +A
Sbjct: 267 RSSLLKRYSVRKLSLDHFYSASKHPEYCARGEFVMNNFTFVPADRTGFELPDDDPHQIQA 326
Query: 370 QQENIRSF 347
++E+ R+F
Sbjct: 327 KREHCRTF 334
>Z70211-5|CAA94160.3| 578|Caenorhabditis elegans Hypothetical
protein K11E4.5a protein.
Length = 578
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -1
Query: 529 RKSIQKRSLLNSFSTVHKYVTHRDPDFEIRK*KPIINFT-----TKGISVENDDTH--EA 371
R S+ KR + S H Y + P++ R + NFT G + +DD H +A
Sbjct: 264 RSSLLKRYSVRKLSLDHFYSASKHPEYCARGEFVMNNFTFVPADRTGFELPDDDPHQIQA 323
Query: 370 QQENIRSF 347
++E+ R+F
Sbjct: 324 KREHCRTF 331
>AF273825-1|AAG15174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-71 protein.
Length = 579
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = -1
Query: 529 RKSIQKRSLLNSFSTVHKYVTHRDPDFEIRK*KPIINFT-----TKGISVENDDTH--EA 371
R S+ KR + S H Y + P++ R + NFT G + +DD H +A
Sbjct: 265 RSSLLKRYSVRKLSLDHFYSASKHPEYCARGEFVMNNFTFVPADRTGFELPDDDPHQIQA 324
Query: 370 QQENIRSF 347
++E+ R+F
Sbjct: 325 KREHCRTF 332
>AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 3 protein.
Length = 341
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 323 FPFGSLIFE*TNVFLLCLMSVVIFNADSFRG-KIYYGLLFSYLKIWVAVSDVFVY 484
+ FG I E + LL + F ADS+ + YG++F I +A+ +F+Y
Sbjct: 106 YRFGEYIIEISPFILLIERFIATFKADSYENRRKLYGIIFFITHISIAI--MFLY 158
>AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical
protein F32F2.1 protein.
Length = 919
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 527 KINTKTKSLKFVFDRTQIRHSPRPRF*DTKIKAHNK 420
+I KTK L D T+I RP F + +K H K
Sbjct: 541 EIPEKTKQLMLSIDNTRIVPFGRPEFAEVSMKNHKK 576
>AF039053-15|AAW88408.1| 279|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 17 protein.
Length = 279
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 232 ISICIE-CTHNIYSINDYSLWINERFFLLLLDTKLEWKSWWANGKSRMKRDN 80
+ CI C YSIN +I+ F LLL TKL + + K + R N
Sbjct: 158 LGCCINACFTKYYSINKGITYISTFTFTLLLSTKLLYLKNYNAEKKSLSRAN 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,689
Number of Sequences: 27780
Number of extensions: 232492
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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