Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2372
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    30   0.26 
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.4  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   5.6  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   9.7  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 555 GGRKWQGKRRLLGLREHCCRRSWQ 484
           GG  W GK  ++ L EHC R  W+
Sbjct: 59  GGSSWTGKIPVVLLNEHCQRSKWE 82


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 402 IAKIAYSAPVAKIAYSAPIAKVSYAAPVAKIAYNSAPLTQVTFSSPAI-SYHH 557
           + K ++SAPV  +  +    +     PVAK +   AP     F  P    YHH
Sbjct: 38  VKKPSHSAPVTPVRSARSSMEQPTFRPVAKNSVTVAPARAAGFCPPQFEEYHH 90


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 417 YSAPVAKI-AYSAPIAKVSYAAPVAKIAYNSAPLTQVTFSSPAISY 551
           Y+ P+  +    + +  V+Y  PV  I   ++PLT  +F++  + Y
Sbjct: 357 YATPLPAVPTVLSGLPSVAYTPPVMHIPTTNSPLTPQSFTNSFLGY 402


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 150 KQQKESRAGDAVQGFYSLVQPDGVHRV 230
           K  ++S  GD++ G YS+++  G   V
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGAEIV 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,031
Number of Sequences: 5004
Number of extensions: 23711
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)