Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2371
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41104-2|AAK18974.3|  304|Caenorhabditis elegans Nuclear hormone...    30   1.9  
U41104-1|AAR30202.1|  318|Caenorhabditis elegans Nuclear hormone...    30   1.9  
AY204195-1|AAO39198.1|  364|Caenorhabditis elegans nuclear recep...    30   1.9  

>U41104-2|AAK18974.3|  304|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 109, isoform a protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 308 PGDSRPAIFVTDPTGSNEGDFFGVLISSKRMINYRSMR 195
           PG  R +  +  P+ SN  +F  + I SK  +NY +MR
Sbjct: 24  PGSFRKSKELISPSSSNHDEFSRMPILSKMKLNYENMR 61


>U41104-1|AAR30202.1|  318|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 109, isoform b protein.
          Length = 318

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 308 PGDSRPAIFVTDPTGSNEGDFFGVLISSKRMINYRSMR 195
           PG  R +  +  P+ SN  +F  + I SK  +NY +MR
Sbjct: 38  PGSFRKSKELISPSSSNHDEFSRMPILSKMKLNYENMR 75


>AY204195-1|AAO39198.1|  364|Caenorhabditis elegans nuclear receptor
            NHR-109 protein.
          Length = 364

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 308 PGDSRPAIFVTDPTGSNEGDFFGVLISSKRMINYRSMR 195
           PG  R +  +  P+ SN  +F  + I SK  +NY +MR
Sbjct: 84  PGSFRKSKELISPSSSNHDEFSRMPILSKMKLNYENMR 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,947
Number of Sequences: 27780
Number of extensions: 285198
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)