Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2370
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of c... 68 6e-12
U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of c... 66 2e-11
AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding p... 66 2e-11
AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich ... 66 2e-11
Z46996-5|CAA87096.1| 268|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC006762-8|AAP31426.1| 295|Caenorhabditis elegans Hypothetical ... 37 0.016
AC006762-7|AAF60555.1| 375|Caenorhabditis elegans Hypothetical ... 37 0.016
Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical pr... 36 0.022
AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein. 36 0.022
AJ276590-1|CAB91651.1| 679|Caenorhabditis elegans LET-413 prote... 35 0.050
AF068716-10|AAC17752.2| 679|Caenorhabditis elegans Lethal prote... 35 0.050
AF068716-9|AAT81195.1| 699|Caenorhabditis elegans Lethal protei... 35 0.050
Z83230-2|CAC42304.1| 444|Caenorhabditis elegans Hypothetical pr... 35 0.066
U29380-12|AAR12986.1| 485|Caenorhabditis elegans Hypothetical p... 34 0.087
U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical p... 34 0.087
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 32 0.47
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 32 0.47
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 30 1.4
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z83231-6|CAI46597.1| 373|Caenorhabditis elegans Hypothetical pr... 28 5.7
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 28 5.7
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 28 5.7
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 28 5.7
AL032647-8|CAI46617.1| 373|Caenorhabditis elegans Hypothetical ... 28 5.7
AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical ... 28 5.7
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of clr
protein 2, isoformb protein.
Length = 558
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/63 (50%), Positives = 43/63 (68%)
Frame = +1
Query: 523 ADLDVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCL 702
A+ D++KEF +C+E RLDLS ITS+P +++LT L E +LY NKL LP+E G L
Sbjct: 58 AEKDLLKEFHKCKEAQDQRLDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQL 117
Query: 703 SNL 711
NL
Sbjct: 118 VNL 120
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
LDL ++ + ++P + L HL + ++ NK++ LP G L +L
Sbjct: 425 LDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSL 468
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPS 687
+L LS++++TSLP ++ L L L NKL +PS
Sbjct: 122 KLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPS 158
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
+L + + I +LP ++ +L L + L N L A+P E G L +L
Sbjct: 447 KLWVQSNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSL 491
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSE 690
+LDL + ++ LP ++ L +LV + NK+ +PSE
Sbjct: 237 QLDLQHNDLSELPYSIGKLVNLVRIGIRYNKIRCIPSE 274
>U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of clr
protein 2, isoforma protein.
Length = 559
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +1
Query: 532 DVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
D++KEF +C+E RLDLS ITS+P +++LT L E +LY NKL LP+E G L NL
Sbjct: 62 DLLKEFHKCKEAQDQRLDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNL 121
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
LDL ++ + ++P + L HL + ++ NK++ LP G L +L
Sbjct: 426 LDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSL 469
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPS 687
+L LS++++TSLP ++ L L L NKL +PS
Sbjct: 123 KLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPS 159
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
+L + + I +LP ++ +L L + L N L A+P E G L +L
Sbjct: 448 KLWVQSNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSL 492
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSE 690
+LDL + ++ LP ++ L +LV + NK+ +PSE
Sbjct: 238 QLDLQHNDLSELPYSIGKLVNLVRIGIRYNKIRCIPSE 275
>AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding
protein SUR-8 protein.
Length = 559
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +1
Query: 532 DVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
D++KEF +C+E RLDLS ITS+P +++LT L E +LY NKL LP+E G L NL
Sbjct: 62 DLLKEFHKCKEAQDQRLDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNL 121
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
LDL ++ + ++P + L HL + ++ NK++ LP G L +L
Sbjct: 426 LDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSL 469
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPS 687
+L LS++++TSLP ++ L L L NKL +PS
Sbjct: 123 KLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPS 159
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
+L + + I +LP ++ +L L + L N L A+P E G L +L
Sbjct: 448 KLWVQSNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSL 492
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSE 690
+LDL + ++ LP ++ L +LV + NK+ +PSE
Sbjct: 238 QLDLQHNDLSELPYSIGKLVNLVRIGIRYNKIRCIPSE 275
>AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich
repeat protein SOC-2 protein.
Length = 559
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +1
Query: 532 DVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
D++KEF +C+E RLDLS ITS+P +++LT L E +LY NKL LP+E G L NL
Sbjct: 62 DLLKEFHKCKEAQDQRLDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNL 121
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
LDL ++ + ++P + L HL + ++ NK++ LP G L +L
Sbjct: 426 LDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRSIGNLCSL 469
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPS 687
+L LS++++TSLP ++ L L L NKL +PS
Sbjct: 123 KLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPS 159
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
+L + + I +LP ++ +L L + L N L A+P E G L +L
Sbjct: 448 KLWVQSNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSL 492
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSE 690
+LDL + ++ LP ++ L +LV + NK+ +PSE
Sbjct: 238 QLDLQHNDLSELPYSIGKLVNLVRIGIRYNKIRCIPSE 275
>Z46996-5|CAA87096.1| 268|Caenorhabditis elegans Hypothetical
protein C34C12.5 protein.
Length = 268
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 565 EGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
E + RL LS + +TS+PPN+ DL L L+ N++ LP L L
Sbjct: 33 EIITRLTLSHNKLTSVPPNIADLVSLQSLNLWNNQIEDLPPSISSLPKL 81
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCL 702
L L ++ + +LP + LT L E ++ GN+L +P E G L
Sbjct: 155 LVLRENDLLTLPKELGKLTRLRELHIQGNRLAMIPPELGNL 195
>AC006762-8|AAP31426.1| 295|Caenorhabditis elegans Hypothetical
protein Y42G9A.3b protein.
Length = 295
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
L L + I S P N+ LT L YL GN+L +P+ GCL L
Sbjct: 157 LHLGGNYIDSCPSNISVLTLLRVLYLGGNRLREIPASIGCLDEL 200
>AC006762-7|AAF60555.1| 375|Caenorhabditis elegans Hypothetical
protein Y42G9A.3a protein.
Length = 375
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
L L + I S P N+ LT L YL GN+L +P+ GCL L
Sbjct: 157 LHLGGNYIDSCPSNISVLTLLRVLYLGGNRLREIPASIGCLDEL 200
>Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical
protein ZC518.3c protein.
Length = 597
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
L L+ + +T LPP + LT+L + NKL +LP+E G + +L
Sbjct: 83 LFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMISL 126
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCL 702
LD+S + + SLP + D+ L YL N+L LP E G L
Sbjct: 106 LDISNNKLRSLPTELGDMISLCHLYLNNNQLRVLPYELGKL 146
>Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical
protein ZC518.3b protein.
Length = 613
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
L L+ + +T LPP + LT+L + NKL +LP+E G + +L
Sbjct: 99 LFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMISL 142
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCL 702
LD+S + + SLP + D+ L YL N+L LP E G L
Sbjct: 122 LDISNNKLRSLPTELGDMISLCHLYLNNNQLRVLPYELGKL 162
>Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical
protein ZC518.3a protein.
Length = 606
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
L L+ + +T LPP + LT+L + NKL +LP+E G + +L
Sbjct: 92 LFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMISL 135
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCL 702
LD+S + + SLP + D+ L YL N+L LP E G L
Sbjct: 115 LDISNNKLRSLPTELGDMISLCHLYLNNNQLRVLPYELGKL 155
>AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein.
Length = 606
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
L L+ + +T LPP + LT+L + NKL +LP+E G + +L
Sbjct: 92 LFLNNNGLTRLPPEIAQLTNLTMLDISNNKLRSLPTELGDMISL 135
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCL 702
LD+S + + SLP + D+ L YL N+L LP E G L
Sbjct: 115 LDISNNKLRSLPTELGDMISLCHLYLNNNQLRVLPYELGKL 155
>AJ276590-1|CAB91651.1| 679|Caenorhabditis elegans LET-413 protein
protein.
Length = 679
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
+LD+S++ I LP N+ + +L + + N+++ LPS FG L L
Sbjct: 224 QLDVSENQIIRLPENLGRMPNLTDLNISINEIIELPSSFGELKRL 268
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEF-GC 699
LDL ++ + +LP + LT L EFY+ N L +LP GC
Sbjct: 179 LDLGQNELEALPAEIGKLTSLREFYVDINSLTSLPDSISGC 219
>AF068716-10|AAC17752.2| 679|Caenorhabditis elegans Lethal protein
413, isoform a protein.
Length = 679
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
+LD+S++ I LP N+ + +L + + N+++ LPS FG L L
Sbjct: 224 QLDVSENQIIRLPENLGRMPNLTDLNISINEIIELPSSFGELKRL 268
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEF-GC 699
LDL ++ + +LP + LT L EFY+ N L +LP GC
Sbjct: 179 LDLGQNELEALPAEIGKLTSLREFYVDINSLTSLPDSISGC 219
>AF068716-9|AAT81195.1| 699|Caenorhabditis elegans Lethal protein
413, isoform b protein.
Length = 699
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 577 RLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
+LD+S++ I LP N+ + +L + + N+++ LPS FG L L
Sbjct: 224 QLDVSENQIIRLPENLGRMPNLTDLNISINEIIELPSSFGELKRL 268
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEF-GC 699
LDL ++ + +LP + LT L EFY+ N L +LP GC
Sbjct: 179 LDLGQNELEALPAEIGKLTSLREFYVDINSLTSLPDSISGC 219
>Z83230-2|CAC42304.1| 444|Caenorhabditis elegans Hypothetical
protein F56A8.3a protein.
Length = 444
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 556 CREEGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
C+ +IRLD + LP + LT L LY N++ LP F L +L
Sbjct: 58 CKMTKLIRLDFGSCQLHHLPDGIGLLTSLQHLNLYNNQIEDLPLSFANLKSL 109
>U29380-12|AAR12986.1| 485|Caenorhabditis elegans Hypothetical
protein ZK546.2a protein.
Length = 485
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
LD+S + +T LPP + ++HL L N+L +LP E L+ L
Sbjct: 46 LDMSINYLTQLPPFIGSMSHLKNLNLSRNQLESLPLEINSLACL 89
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLS 705
L+LS++ + SLP + L L + NKL LP C+S
Sbjct: 69 LNLSRNQLESLPLEINSLACLEVLNVSQNKLTELPDLSQCVS 110
>U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical
protein ZK546.2c protein.
Length = 501
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLSNL 711
LD+S + +T LPP + ++HL L N+L +LP E L+ L
Sbjct: 46 LDMSINYLTQLPPFIGSMSHLKNLNLSRNQLESLPLEINSLACL 89
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEFGCLS 705
L+LS++ + SLP + L L + NKL LP C+S
Sbjct: 69 LNLSRNQLESLPLEINSLACLEVLNVSQNKLTELPDLSQCVS 110
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLV-ALPSEFGCLSNL 711
+D+S + + PP+V LT L L GN + LP ++G LS L
Sbjct: 889 MDISDNKLLQAPPDVARLTLLSMLNLSGNTAIKELPPDYGMLSRL 933
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLV-ALPSEFGCLSNL 711
+D+S + + PP+V LT L L GN + LP ++G LS L
Sbjct: 887 MDISDNKLLQAPPDVARLTLLSMLNLSGNTAIKELPPDYGMLSRL 931
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 565 EGVIRLDLSKSSITSLPPNV-RDLTHLVEFYLYGNKLVALPSE 690
+ + RLDLSK+ IT + P L +L LYGN + L S+
Sbjct: 311 KNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSD 353
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 565 EGVIRLDLSKSSITSLPPNV-RDLTHLVEFYLYGNKLVALPSE 690
+ + RLDLSK+ IT + P L +L LYGN + L S+
Sbjct: 311 KNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSD 353
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
protein F43C1.1 protein.
Length = 1036
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 523 ADLDVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSE 690
A L I + R VI DLS + I S P + L+HL + L N + ++PSE
Sbjct: 185 APLGYIDDLYRVHSLQVI--DLSANQILSFPIQLTLLSHLRQLNLSSNYISSVPSE 238
>Z83231-6|CAI46597.1| 373|Caenorhabditis elegans Hypothetical
protein F57G9.7 protein.
Length = 373
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 581 WISANHRLLLFRQMLEILHI**SFICMGISWL 676
WIS +H + +F M + +HI FIC + ++
Sbjct: 295 WISPDHTVFVFYVMEKFIHINPLFICSAVFYM 326
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 517 IQADLDVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTH 639
I+A++ + K IR EE VIR+ I + ++ LTH
Sbjct: 163 IEAEISLFKRKIRIVEEDVIRIRRENDGIYNEIARIKQLTH 203
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 517 IQADLDVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTH 639
I+A++ + K IR EE VIR+ I + ++ LTH
Sbjct: 789 IEAEISLFKRKIRIVEEDVIRIRRENDGIYNEIARIKQLTH 829
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 517 IQADLDVIKEFIRCREEGVIRLDLSKSSITSLPPNVRDLTH 639
I+A++ + K IR EE VIR+ I + ++ LTH
Sbjct: 789 IEAEISLFKRKIRIVEEDVIRIRRENDGIYNEIARIKQLTH 829
>AL032647-8|CAI46617.1| 373|Caenorhabditis elegans Hypothetical
protein F57G9.7 protein.
Length = 373
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 581 WISANHRLLLFRQMLEILHI**SFICMGISWL 676
WIS +H + +F M + +HI FIC + ++
Sbjct: 295 WISPDHTVFVFYVMEKFIHINPLFICSAVFYM 326
>AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical
protein T23C6.3 protein.
Length = 533
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 268 FLVHNKKVILV*SGMNLDN-SSRENSEALDSVGTVSPREKYHTMREKKLSAASIT 429
FL +N+ I M++D S + S+ L T+SPREK ++++K+S T
Sbjct: 337 FLSNNETTIASDMDMSIDRPQSMDMSQTLSPEQTLSPREKLQ-VQDRKISTTQET 390
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 580 LDLSKSSITSLPPNVRDLTHLVEFYLYGNKLVALPSEF--GCLSNL 711
L L+++ I + P +RDL +L L GNKL + + GC L
Sbjct: 222 LKLAENMIHATPEALRDLRNLTHLNLNGNKLNRIDGDVLKGCTDTL 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,145
Number of Sequences: 27780
Number of extensions: 319290
Number of successful extensions: 969
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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