Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2369
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   1.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   8.6  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   8.6  

>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +1

Query: 19  SVRLSSVANLTASNSALVVTNRSAVVSCDILSST*SVRGTINAAGRIEVCLDNSMRRMGR 198
           ++ L+   N   SNS+  V   +   +C   +S  + + T  +  R +V L  +   +  
Sbjct: 396 AISLTESFNSPVSNSSPNVPINNFTSTCAFENSHLNFQITPKSKTRDQVVLLATYTNLSP 455

Query: 199 WSRLE-LLSVINLPQTCNLVLRPRA*LRLGDLR 294
           +  +E L S I +P+  NLVL+P++   L  L+
Sbjct: 456 YDTVENLQSFIAVPKKYNLVLQPQSGTNLSPLQ 488


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -3

Query: 323  YVIKNKNGFTRKSPSLSYALGRSTRLQVCGRLITLSSSNRLQRPIRLIELSRQTSIR 153
            Y+I N   F  K    +  +     +Q+ GRL  L  S  L  P  L E    T +R
Sbjct: 1515 YIIHNLGEFKLKGLDTTEMISLVYPVQLQGRLERLIKSRSLGTPTALPETQTYTPVR 1571


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 114 TEYITRNDGTSIRNDQSRVACSKI 43
           ++++ + DG S+ ND  + AC+ +
Sbjct: 560 SDFLKKEDGLSLNNDFKKPACNNV 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,056
Number of Sequences: 5004
Number of extensions: 46251
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)