Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2368
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 30 0.11
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 1.8
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 2.4
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 4.1
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 4.1
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 24 7.2
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 24 7.2
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 24 7.2
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 24 9.6
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 24 9.6
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.11
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 158 SAAPCTPRGTGRSSPRCTSPGSRTSCRTPGPALSFLNTHL 39
SAAP TP T + T+P S + R GPA +N +
Sbjct: 267 SAAPSTPTSTENVNYNMTTPSSPSYSRQTGPASETINDEI 306
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 139 GVHGAALPHGAVLPAVHERRQLHRARPLLLSAGLPGPTLRGRYMCT 276
G+HG + + +R A P L +AG P P L ++ T
Sbjct: 177 GIHGEDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVT 222
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 50 LERTGPDPECDKKCANQGWCNEEKICQCPE 139
L TG E ++K A +GW NE+ + Q E
Sbjct: 93 LAATGDGVEVEEKRAWEGWWNEKIVSQARE 122
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 213 GAVQLPPFMHCG*HSAVRQCCPMYPSGHWQIFSSLHQPWF-AHFLSHS 73
G +P F+ +RQ + P+ ++ + PWF A +HS
Sbjct: 235 GIYTIPSFVSSSASDLIRQMLMVLPTSRIKVAEIMQHPWFIADLPTHS 282
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +2
Query: 143 YMGQHCRTALCYPQC--MNGGNCTAPGLCS 226
Y + C L Y C +NG CTA LC+
Sbjct: 507 YSFETCSAFLHYIYCGTLNGSYCTAKNLCN 536
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +2
Query: 128 QCPEGYMGQHCRTALCY--PQCMNGGNCTAPGL 220
Q P G MGQ A CY C +GG T L
Sbjct: 244 QVPLGRMGQPVEVASCYLFLACSDGGYMTGQTL 276
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 324 QKQVSFWIHF-PPFIHFCAHIPPSQCRP 244
+K +SF H P IHF ++P Q +P
Sbjct: 318 EKYLSFSPHIREPTIHFVLYVPSPQIQP 345
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 17 LKKECAHRGVYLERTGPDPECDKKCANQGW 106
+K+ C+ V L DP+C+K+ + G+
Sbjct: 839 VKESCSKEAVDLITKLMDPDCNKRLGSNGY 868
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 23.8 bits (49), Expect = 9.6
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 320 NRYPSGYIFHRSYISVHIY--LPRSVGPGSPAD 228
N+ P G+I RS ++VH+Y + RSV PG D
Sbjct: 263 NQVPIGHI-PRS-LTVHLYGAITRSVNPGDIVD 293
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 134 GTGRSSPRCTSPGSRTS 84
G+GRSSP T P SR +
Sbjct: 104 GSGRSSPLYTQPRSRAT 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,052
Number of Sequences: 5004
Number of extensions: 36351
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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