Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2365
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   2.5  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   2.5  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   3.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   4.4  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   5.8  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   7.6  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 176 RESVKGFPNVKKKG-INTLRS*LTITYVKGHST*KKIYNYIFATCLKLGDGIHVVMSMES 352
           R  ++  P+V+  G +N + S  T T    H T  KIY         L +  H+ +S+  
Sbjct: 308 RAIIRRLPSVETLGSVNVICSDKTGTLTMNHMTVTKIYTCGMLAAFSLPESEHIELSVRR 367

Query: 353 VI 358
            +
Sbjct: 368 TV 369


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 314 LGDGIHVVMSMESVIHSSPDA 376
           LG+GI V  ++ ++IH+SP A
Sbjct: 454 LGNGIAVTTTLVAIIHASPSA 474


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 125 WKKGRVIMPNTKPIKSTSSG 66
           ++KGR+I P  +P+K   +G
Sbjct: 479 YRKGRIIKPGAQPLKHVKNG 498


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 222 FMPFFLTLGNPFT 184
           F PFFL  GNPFT
Sbjct: 421 FNPFFLLHGNPFT 433


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 314 LGDGIHVVMSMESVIHSSPDAL*L-RRPVSAIKKKKKNSRGGPVPNSP 454
           + DGI+   ++  + ++    + L RRP   +K  K  +R  P+ N P
Sbjct: 855 IADGIYASTTLHPIDNAKNRLVSLLRRPKHKVKHAKVETRESPMKNKP 902


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 122 KKGRVIMPNTKPIKSTSSGHFRSRKSTRVVM 30
           ++   ++PN KP+K+ + G+ +   S  V +
Sbjct: 464 RREEALLPNAKPVKTATFGNGKKATSEEVYL 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,254
Number of Sequences: 5004
Number of extensions: 32262
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)