Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2365
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    30   0.72 
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    30   0.72 
AC199170-8|ABO33266.1|  469|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z81504-2|CAB04119.1|  351|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -2

Query: 457 IGRIGYRAPPRVFFFFF---YCTDG 392
           IG  G+ APP VF FFF   YC  G
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNSG 372


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -2

Query: 457 IGRIGYRAPPRVFFFFF---YCTDG 392
           IG  G+ APP VF FFF   YC  G
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNSG 370


>AC199170-8|ABO33266.1|  469|Caenorhabditis elegans Hypothetical
           protein T08D2.7 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 343 GHHNVNTVTKLETCSENIVIYFFLSRVTFDI-RNCESR 233
           G H+  T     T +E++ +Y F+S++ F I R+ E+R
Sbjct: 70  GSHDAPTNFNFSTVAEDVGLYKFISKIQFSIDRDTETR 107


>Z81504-2|CAB04119.1|  351|Caenorhabditis elegans Hypothetical
           protein F15H9.2 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 264 TRLKKKYITIFSLHVSSLVTVFTL*CPWNPLSTHHQMRCDFVD 392
           T   KKY   F+L ++ L       C WN   T+ Q + DFV+
Sbjct: 125 TAPNKKYFKTFTLFLTHLFPFAAAFCMWNSNLTNQQKQ-DFVE 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,069,311
Number of Sequences: 27780
Number of extensions: 178599
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)