Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2364
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0469 + 17864265-17864789,17865648-17865854,17865936-178661...    30   0.96 
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    29   2.2  
11_01_0663 + 5402061-5402241,5402366-5402373                           27   6.8  
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174...    27   6.8  
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373...    27   9.0  
02_01_0237 - 1570395-1571225,1572225-1572245,1572336-1572506,157...    27   9.0  

>09_04_0469 +
           17864265-17864789,17865648-17865854,17865936-17866175,
           17866705-17866771,17866872-17867015,17867202-17867297,
           17867818-17867975,17868054-17868190,17868551-17868752
          Length = 591

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 15  PVCLPNTPDSLYTGAEAILA 74
           P+CLP+ P+S+   AEAI+A
Sbjct: 546 PICLPSLPESVAPNAEAIMA 565


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 410 ASPVGIVPDPVQVFGNPRIHSRVTLSSTPVAP 315
           ASPV + P  +    NP +HSR  + S PV P
Sbjct: 420 ASPVALPPHSLSP-RNPNVHSRSPIPSPPVLP 450


>11_01_0663 + 5402061-5402241,5402366-5402373
          Length = 62

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 177 SSKIKNTMMCAGYPATAHKDACTGDSGGPLXXENERNVYELIGIVSW 317
           SS   NT   AG PA++   AC      P   E  R + E  G  +W
Sbjct: 3   SSSTTNTSDGAGKPASSSSSACPRGHWRPGEDEKLRQLVEKYGPQNW 49


>10_08_0448 +
           18015609-18016052,18017147-18017248,18017332-18017475,
           18017555-18017705,18017793-18017820,18018456-18018621,
           18018701-18018764,18019320-18019423,18019572-18019710,
           18020114-18020232,18020333-18020485,18020565-18020654,
           18020952-18021029,18021671-18021829,18021914-18022117,
           18022209-18022414,18022495-18022630,18022859-18022898,
           18023329-18023408,18023569-18024228
          Length = 1088

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 403 PSVLSLIQSKYLVTLVYTPG*PFLAHP*PHETIPI 299
           PSVL  +Q +Y   L+YT   P L    P + +P+
Sbjct: 214 PSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKKVPL 248


>07_03_0902 -
           22435692-22436156,22436684-22436923,22437228-22437349,
           22437441-22437587,22437753-22437882,22437981-22438116,
           22438223-22438428,22438644-22438844,22438999-22439157,
           22439781-22439858,22440453-22440542,22440625-22440777,
           22440873-22440991,22441190-22441328,22441422-22441525,
           22441944-22441989,22442087-22442252,22442356-22442383,
           22442460-22442610,22442686-22442829,22442912-22443013,
           22443566-22444093
          Length = 1217

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 403 PSVLSLIQSKYLVTLVYTPG*PFLAHP*PHETIPISS*TFLS 278
           PSVL  +QS+Y   L+YT   P L    P + + +    F+S
Sbjct: 242 PSVLYDLQSRYSRDLIYTKAGPVLVAVNPLKEVALYGKDFIS 283


>02_01_0237 -
           1570395-1571225,1572225-1572245,1572336-1572506,
           1572942-1573070,1574364-1574657
          Length = 481

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 174 NSSKIKNTMMCAGYPATAHKDACTGDSGGPLXXENERNVY 293
           NS KI  +  C G P     D+C G S   L  +N + ++
Sbjct: 190 NSCKIDRSKPCKGAPTALTIDSCRGVSVRNLRLQNAQQMH 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,742
Number of Sequences: 37544
Number of extensions: 274582
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)