Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2364
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...   103   4e-23
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    91   3e-19
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    66   8e-12
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    40   8e-04
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    30   0.66 
U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF040655-10|AAB95045.1|  195|Caenorhabditis elegans Hypothetical...    27   4.6  
AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical ...    27   4.6  
U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score =  103 bits (248), Expect = 4e-23
 Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 1/126 (0%)
 Frame = +3

Query: 12  RPVCLPNTPDSLYT-GAEAILAGWGATGETGNWSCMLLKAELPILSNEECQGTSYNSSKI 188
           +P+CLP+  D +YT G + +++GWG+ G    ++  L  A +PI++  +C  +S   S +
Sbjct: 135 QPICLPSK-DFVYTPGRQCVVSGWGSMGL--RYAERLQAALIPIINRFDCVNSSQIYSSM 191

Query: 189 KNTMMCAGYPATAHKDACTGDSGGPLXXENERNVYELIGIVSWGYGCARKGYPGVYTRVT 368
             +  CAGY      D+C GDSGGP     E   + L G++SWG GCA+K  PG+YT V 
Sbjct: 192 SRSAFCAGY-LEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVA 250

Query: 369 KYLDWI 386
            YL WI
Sbjct: 251 PYLSWI 256


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
 Frame = +3

Query: 12  RPVCLPNTPDSLYTGAEAILAGWGATGETGNWSCMLLKA-ELPILSNEECQGTSYNSSKI 188
           RP+CLP+ P         ++ GWG+T E  + S   L+   +P+LS   C        +I
Sbjct: 162 RPICLPSLP--AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRI 219

Query: 189 K-NTMMCAGYPATAHKDACTGDSGGPLXXENERNVYELIGIVSWGYGCARKGYPGVYTRV 365
              +M+CAGY +    D+C GDSGGPL    + + +EL G+VSWG GCAR G PGVY  V
Sbjct: 220 HLPSMLCAGY-SYGKIDSCQGDSGGPLMCARDGH-WELTGVVSWGIGCARPGMPGVYGNV 277

Query: 366 TKYLDWI 386
                WI
Sbjct: 278 HSASTWI 284


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 66.5 bits (155), Expect = 8e-12
 Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 17/143 (11%)
 Frame = +3

Query: 12  RPVCLPNTPDSLYTGAE-AILAGWGAT-GETGNWSCMLLKAE------LPILSNEECQGT 167
           +PVCL +    L    +  ++ G+G T GE  +    L+ ++      +PI+S+++C  T
Sbjct: 140 KPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKT 199

Query: 168 ----SYNSSKIKNTMMCAGYPATAHKDACTGDSGGPLXXENERNVYELIGIVSWGY---- 323
               S  S KI    +CAG  A  H  A  GDSGGPL        Y  IGI S+G     
Sbjct: 200 WRFLSLLSVKITGYQICAG--AYLHGTA-PGDSGGPLLIHKSNGEYVQIGITSYGADGLD 256

Query: 324 GCARKG-YPGVYTRVTKYLDWIR 389
           G   +G +PGVYTR++KY+ WI+
Sbjct: 257 GVIDQGKFPGVYTRISKYVPWIQ 279


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
 Frame = +3

Query: 21  CLPNTPD-SLYTGAEAILAGWGATGETGNWSCMLLKAELPILSNEECQGTSYN-SSKIKN 194
           CLP  P+ ++ +GA     GWG+    G  +      ++  L+ E       N  + I  
Sbjct: 197 CLPFLPEVNIQSGANVTSFGWGSDPGKGFDNAAFPMIQVLTLATETLATCEENWGTSIPF 256

Query: 195 TMMCAGYPATAHKDACTGDSGGPLXXENERNVYE-LIGIVSWGYGCAR 335
              C        K+ C+GDSGG L      +  E +I IVS+G  C +
Sbjct: 257 DSFCTA--EEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGSDCVQ 302


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 237 ACTGDSG-GPLXXENERNVYELIGIVSWGYGC 329
           +C GDSG G +   + RNV  L+G++S G  C
Sbjct: 206 SCDGDSGSGVVRTSDTRNVQVLVGVLSAGMPC 237


>U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical
           protein C44B7.4 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 6   CRRPVCLPNTPDSLYTGAEAILAGWG 83
           C   +C+PN  D+ Y  AE+ +  WG
Sbjct: 171 CPPCICVPNPTDASYLEAESQIYAWG 196


>AF040655-10|AAB95045.1|  195|Caenorhabditis elegans Hypothetical
           protein T24E12.11 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 103 FPVSPVAPHPASIASAPVYKLSGVLGRHTG 14
           FP +P+ PHP SI  A ++ +S   G ++G
Sbjct: 30  FPAAPMTPHPYSIPEA-LFNMSPDYGLNSG 58


>AF036688-4|AAB88313.1|  233|Caenorhabditis elegans Hypothetical
           protein C24D10.4 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 115 MQDQFPVSPVAPHPASIASAPVYKLSGVLGRHTGR 11
           M DQ   +PVAP P +       +L+ +LG   GR
Sbjct: 1   MSDQEETAPVAPPPLTAEERRQRRLAKILGNSEGR 35


>U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical
           protein T21E12.3 protein.
          Length = 162

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
 Frame = +3

Query: 12  RPVCLPNTPDSLYTGAEAI-LAGWGATGETGNWSCMLLKAELPILSNEECQGTSYNSSKI 188
           R +C+ +   +L+     + L G+G     GN S   L++E   +  E+C  T+  +   
Sbjct: 6   RFICVNHEDSNLFNENNRMQLFGFGIDPSAGNQSAGPLRSET--VKAEKCFTTTGKAFCT 63

Query: 189 KNTMMCAGYPATAHKDACTGDS-GGPLXXENERNVYELIGIVSWGYGC 329
           K+         + ++ ACTGDS GG +   N+R    ++G++  G  C
Sbjct: 64  KSI--------SKNQLACTGDSGGGVVQLINDR--VTVVGVIYEGVTC 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,649,304
Number of Sequences: 27780
Number of extensions: 221740
Number of successful extensions: 561
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)