Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2363
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.57 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 10  KSRSYDSCFRFIGTNVIWMTVISSKFEYIPLLISYI 117
           KSR+ +S +R     + W++     F YI +LI+ +
Sbjct: 393 KSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 746 ILFALIRTTLKLTRTYSVH 690
           +LF+ +RT  KL  TY  H
Sbjct: 24  VLFSFLRTRTKLQPTYFHH 42


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 746 ILFALIRTTLKLTRTYSVH 690
           +LF+ +RT  KL  TY  H
Sbjct: 24  VLFSFLRTRTKLQPTYFHH 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,120
Number of Sequences: 438
Number of extensions: 3918
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)