Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2362
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    28   1.3  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    28   1.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   6.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.1  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.1  

>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 86  LARYSAELFLTRPIYKDMNPTASSSNRL*SGSPKESTRSHK 208
           L+   A L  T P     NP+  SS    +GSP +S  S+K
Sbjct: 70  LSHKDASLLATMPSVASSNPSLISSGSSQTGSPSQSLSSNK 110


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 448 NVDCSQAIEHYKLNADPLKNPYVPKQKPEIHQE 546
           N D   ++EH K++ D L N  + K++ EI  +
Sbjct: 520 NTDADVSLEHAKISFDSLDNSVIVKKEEEIENK 552


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 460 SQAIEHYKLNADPLKNPY 513
           SQA +HYKL+ + L+N Y
Sbjct: 246 SQAAQHYKLDVNSLRNAY 263


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 90  ASQRPQDSLTHFTAHVASVQLFTRCK 13
           +S +P  ++     H++SVQ+ T CK
Sbjct: 370 SSNKPPLTMLQLDIHISSVQILTHCK 395


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 175  RKPQREHEKPQDLRNVPGTPGVDYPIYHS 261
            R+P R+   PQ   NVPGT     PI  S
Sbjct: 935  RRPPRQLIPPQQSTNVPGTSKPSGPITSS 963


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 229  TPGVDYPIYHSVPETRFSCEHVPIHPGMYANVET 330
            +P + Y +   VP   F+ EH P H   Y  +ET
Sbjct: 2317 SPKMTYSLKLDVPLPFFALEHRPTHVISYTELET 2350


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 179 SPKESTRSHKTCATFPEPLAWTTQSTTPFRRLDSRVSTCRYTLECTL 319
           SPK+S   HK    +P P+  +  +  P+  +DS++ T + T+   L
Sbjct: 503 SPKKS--QHKL---YPNPVVESVFNDVPYSEIDSQLHTIKSTIAARL 544


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 436 DWWYNVDCSQAIEHYKLNADPLKNPYVPKQKPEIHQEQ-PEEYNIPEEAYFR 588
           ++W +V+    +E   +  + L NP   +   EIH E+ P E  +   A FR
Sbjct: 526 NFWGSVNYGHVLERQNVYIEDLSNPSYKRLAREIHIEKLPSELKL-RNAEFR 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,374
Number of Sequences: 5004
Number of extensions: 62034
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)