Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2362
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1153 - 9172529-9172678,9173416-9173642,9174139-9174310           28   7.2  
05_01_0555 + 4867494-4867577,4868987-4869607                           28   9.5  
04_04_0569 + 26293891-26294931                                         28   9.5  

>01_01_1153 - 9172529-9172678,9173416-9173642,9174139-9174310
          Length = 182

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 224 GTLRRSCGFSCSLWGFLIKAC 162
           GTL  SC   C LWG L   C
Sbjct: 79  GTLAGSCTTHCMLWGLLTSLC 99


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  GEMGKAVLRALTGALLCGVVSDAAYLQRYEPYGLQF 159
           G  G  V++A+T  +   V + AAY  R EP+ L F
Sbjct: 78  GGGGGRVIQAITMLVATAVTAQAAYRARREPWDLAF 113


>04_04_0569 + 26293891-26294931
          Length = 346

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 VPETRFSCEHVPIHPGMYANVETGCQAYHVCHDGRE 369
           +P+ R    HVP      A   +GC+  +VC D ++
Sbjct: 141 LPDPRLFATHVPFTSLPSAAAASGCKVVYVCRDPKD 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,818,112
Number of Sequences: 37544
Number of extensions: 407601
Number of successful extensions: 1132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)