Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2362
         (774 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020944-1|AAH20944.1|  426|Homo sapiens actin-like 6B protein.        31   6.1  
AF053356-5|AAC78795.1|  475|Homo sapiens actin like gene protein.      31   6.1  
AF041475-1|AAD54678.1|  426|Homo sapiens BAF53b protein.               31   6.1  
AC099394-1|AAP21874.1|  426|Homo sapiens unknown protein.              31   6.1  
AB015906-1|BAA74576.1|  426|Homo sapiens actin-related protein h...    31   6.1  

>BC020944-1|AAH20944.1|  426|Homo sapiens actin-like 6B protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 442 WYNVDCSQAIEHYKLNADPLKN-PY---VPKQKPEIHQEQPEEYN 564
           W+N  C++ I+ ++ +   + + PY   V  Q P +H E P  YN
Sbjct: 247 WHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYN 291


>AF053356-5|AAC78795.1|  475|Homo sapiens actin like gene protein.
          Length = 475

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 442 WYNVDCSQAIEHYKLNADPLKN-PY---VPKQKPEIHQEQPEEYN 564
           W+N  C++ I+ ++ +   + + PY   V  Q P +H E P  YN
Sbjct: 247 WHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYN 291


>AF041475-1|AAD54678.1|  426|Homo sapiens BAF53b protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 442 WYNVDCSQAIEHYKLNADPLKN-PY---VPKQKPEIHQEQPEEYN 564
           W+N  C++ I+ ++ +   + + PY   V  Q P +H E P  YN
Sbjct: 247 WHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYN 291


>AC099394-1|AAP21874.1|  426|Homo sapiens unknown protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 442 WYNVDCSQAIEHYKLNADPLKN-PY---VPKQKPEIHQEQPEEYN 564
           W+N  C++ I+ ++ +   + + PY   V  Q P +H E P  YN
Sbjct: 247 WHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYN 291


>AB015906-1|BAA74576.1|  426|Homo sapiens actin-related protein
           hArpN alpha protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 442 WYNVDCSQAIEHYKLNADPLKN-PY---VPKQKPEIHQEQPEEYN 564
           W+N  C++ I+ ++ +   + + PY   V  Q P +H E P  YN
Sbjct: 247 WHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYN 291


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,083,700
Number of Sequences: 237096
Number of extensions: 2341884
Number of successful extensions: 5878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5850
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)