Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2362
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016671-3|AAB66109.2|  205|Caenorhabditis elegans Collagen prot...    29   2.8  
AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical...    29   3.7  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   8.5  

>AF016671-3|AAB66109.2|  205|Caenorhabditis elegans Collagen protein
           72 protein.
          Length = 205

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 183 PKRAREATRPAQRSRNPW 236
           P+R + +TRP +R RNPW
Sbjct: 8   PRRNKGSTRPKRRRRNPW 25


>AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical
           protein Y54E10A.13 protein.
          Length = 165

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +2

Query: 143 PTASSSNRL*SGSPKESTRSHKTCATFPEPLAWTTQSTTPFRRLDS 280
           PTAS   R  +GSP  STRS  + +    P+A TT ++ P R  DS
Sbjct: 112 PTASGGAR--NGSP--STRSSTSSSIQGSPIAPTTSASQPTRPSDS 153


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 150 PPVRTGFNQEAPKRAREATRPAQRSRNPWR 239
           PP RT  +   P+R R +  P +RSR+P R
Sbjct: 107 PPRRTRRSPSPPRRRRISRSPVRRSRSPPR 136


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 496 PLKNPYVPKQKPEIHQEQPEEYNIPEEAYF 585
           P   P+VP+     +++   EY  PE+AYF
Sbjct: 818 PTPTPHVPQALSVRNEKDDFEYETPEDAYF 847


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
            protein protein 6 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 144  LRPPVRTGFNQEAPKRAREATRPAQRSRNPWRGLP 248
            +RP  RTG +Q  P +      P   +++PWR  P
Sbjct: 936  MRPVNRTGNSQAPPWQRSRQPSPPPSNQSPWRQQP 970


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,850
Number of Sequences: 27780
Number of extensions: 372880
Number of successful extensions: 1256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)