Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2362
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.78 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.78 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.78 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.3  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 457 CSQAIEHYKLNADPLKNPYVPKQKPEIHQEQPEEYNIPE 573
           C Q    ++L  + +  PYVP+ K  +  +  EE N+ E
Sbjct: 266 CPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEEGNVEE 304


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 457 CSQAIEHYKLNADPLKNPYVPKQKPEIHQEQPEEYNIPE 573
           C Q    ++L  + +  PYVP+ K  +  +  EE N+ E
Sbjct: 181 CPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEEGNVEE 219


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 457 CSQAIEHYKLNADPLKNPYVPKQKPEIHQEQPEEYNIPE 573
           C Q    ++L  + +  PYVP+ K  +  +  EE N+ E
Sbjct: 500 CPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEEGNVEE 538


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 451  VDCSQAIEHYKLNADPLKNPYVP 519
            +DCS   E+Y+L     KN   P
Sbjct: 963  IDCSTQSEYYELEVKDQKNGKPP 985


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 37  ASNMCGEMGKAVLRALTGALLCGVVSDAA 123
           AS++      A   + TGAL  G+VSD A
Sbjct: 295 ASDILWTQASAKAISETGALFFGLVSDTA 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,740
Number of Sequences: 438
Number of extensions: 4992
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)