Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2361
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    26   3.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.3  

>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 55  PTTFAYFSDXXXXXXXXXXXXCYCSSREMRFGLKALFGLGEYFSLV 192
           P+    FSD            C C S EM+  ++  +G   YFSLV
Sbjct: 198 PSLLQEFSDDLARTNIYCEFLCGCWSEEMQLLIQRTYG-DHYFSLV 242


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 6   GSFDKFCMLLALLQPDTNYIRVLFRYFDYRNLNVT*YLLLFFTRNAFRP*SLVR 167
           GS     +L+  L      IR  F++F+ ++   T  +LLF    AF P  L R
Sbjct: 505 GSILAGLLLMPGLSMCAGAIRKKFQFFNIKSAGATSTMLLFAVLGAFAPTMLFR 558


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 YFSLVPSNFYWW*DLL*VRTG 240
           YF L P+ F+W  DL+ +  G
Sbjct: 788 YFGLAPARFHWSGDLINIADG 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,850
Number of Sequences: 5004
Number of extensions: 38074
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)