Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2361
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164...    27   6.3  
03_05_1104 + 30431833-30432143,30432789-30432862,30432949-304330...    27   8.4  
01_06_1749 - 39636951-39638102                                         27   8.4  

>01_01_0189 -
           1640581-1640832,1640936-1641132,1641243-1641608,
           1641826-1642224,1642313-1642719,1642814-1642941
          Length = 582

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 191 TRLKYSPSPNKALRPKRISREEQ*QI-LGHV*ITIIKISEKYANVVGIRLQQCEEHTKLV 15
           +RLK    P + LR  ++  EE+  I LG + + I+    +   +   +L  CEE    V
Sbjct: 502 SRLKDLTRPRRCLRRTKLREEEEMSILLGLIDLKIVARVLRMPEITDQQLHWCEEKMNRV 561

Query: 14  K 12
           K
Sbjct: 562 K 562


>03_05_1104 +
           30431833-30432143,30432789-30432862,30432949-30433067,
           30434462-30434526,30434962-30435310
          Length = 305

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -3

Query: 408 HLVLSGYWSP*TSTTQMRHPP*DIVLRSQYC---HNGCPTLQTETHYCFTAEIGGAVVPT 238
           HL L   W+P T+    RHPP   V   + C   H+  P   T+        +G +   T
Sbjct: 22  HLPLLNRWTPPTAAAAERHPPPPPVRLPRPCASSHDPVPP-PTQPFAPALEAVGASGCAT 80

Query: 237 RADSQE 220
           R D  E
Sbjct: 81  RGDEGE 86


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 323 SIVTTAAPPFKPKRITA 273
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,069
Number of Sequences: 37544
Number of extensions: 296715
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)