Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2358
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.41 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.71 
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   3.8  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    26   5.0  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   5.0  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   6.6  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    25   8.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.8  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   8.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 509  QHPASRTQPRKHLQRSFKNHFPQIH 583
            Q+P      RKHL R+F+N F +IH
Sbjct: 1012 QNPPGVYAGRKHLSRAFRNRFLEIH 1036


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 488  YCPMKEPSSFMPAVSPSPYSAIESVSLSGPGLVPLLIEWRDL 363
            Y P+   S +     P+P   I ++SL   GL+ +L+EW DL
Sbjct: 1896 YVPILIDSLYKFGAIPNPNPEIRALSL---GLIKVLLEWNDL 1934


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 482 PMKEPSSFMPAVSPSPYSAIESVSLSGPGLVP 387
           PM  P+S +   SP P  ++ +  +S P L P
Sbjct: 458 PMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNP 489


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +1

Query: 358 DNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYG 492
           +N S  +  S    G    +++   YG   T G N   +  G YG
Sbjct: 51  NNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYG 95


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -3

Query: 584 DGSGENDF*TSVANACEAESGWPDVGGRRFRPYCP-MKEPSSFMPAVSP 441
           D + E+D   +V    E  + W  +   R  P C   KEP  ++    P
Sbjct: 425 DNNNESDIGLTVKKKVENGNAWKQIFSERAPPLCEGHKEPCKYLTVRKP 473


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = +1

Query: 367 SRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRKRRPPTSGQPDSASQA 543
           S  S SS        D DS +   D E+   +ED              +S   DS+S +
Sbjct: 218 SSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNS 276


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +1

Query: 10  TNDITEDDFVILTGLEPGQLYEVKVTVHDGHYFSTSELRTVDTSIDGPIVKP 165
           T D  ++ + +L+  +  Q Y++K      HY+S  +L   +   +G    P
Sbjct: 45  TIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYSIVDLSEFEELDNGSYYYP 96


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 63  PAVRGQGHGARRPLLQHQRAADGRHLHRRTDSEAG 167
           P V   G+G      Q+QR     H+ RR D+  G
Sbjct: 62  PLVTNNGNGNSNVSTQYQRLTPREHVLRRPDTYIG 96


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 502 RPPTSGQPDSASQAFAT 552
           RPP +GQ DSA+ A  T
Sbjct: 196 RPPAAGQDDSAADASTT 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,773
Number of Sequences: 5004
Number of extensions: 33916
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)