Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2356
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0985 - 9994219-9995064                                           31   0.74 
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567...    29   5.2  
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    28   6.9  
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476...    28   6.9  

>12_01_0985 - 9994219-9995064
          Length = 281

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 740 LIEFKLKPTQNKILYLLCKMYVP*NNL*IKYHKQ*VNIFSEKDEPDALIIN--YQHLTS 570
           L+     P   KIL++L K  +  NN   + HK+ V I +EK + +  +IN   ++LTS
Sbjct: 217 LVSISRSPDIKKILFVLLKDMINKNNSNDEKHKKVVGIKAEKSDDEKQLINKLREYLTS 275


>11_01_0689 -
           5678227-5678343,5678475-5678636,5678751-5678846,
           5679345-5679406,5679648-5679723,5679847-5679929,
           5680525-5680853,5681402-5681448,5681707-5681843,
           5682093-5682126
          Length = 380

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 252 VLPPVIKQCEDFRECVG*LSVEGLLCDLLR 341
           VLP    +C D R C   LS E  LCDLLR
Sbjct: 91  VLPVFTGECGDCRHC---LSEESNLCDLLR 117


>10_08_1005 -
           22179407-22180122,22180210-22180653,22180737-22180861,
           22180939-22181169,22181250-22181805,22181896-22182312,
           22182405-22183216,22183653-22183738,22184464-22184534,
           22184553-22185573,22186018-22186062,22186252-22186326,
           22186797-22186871
          Length = 1557

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 417 CKGSTSAKKKLGVHDSESQ 473
           CKGS+S+K+K  VH S+++
Sbjct: 787 CKGSSSSKQKQSVHSSQNE 805


>01_01_0633 -
           4767914-4768020,4768057-4768085,4768590-4768745,
           4768835-4768983,4769106-4769638,4769900-4770068,
           4770255-4770347,4770641-4770698,4771392-4771471,
           4771548-4771715,4772090-4772242,4772756-4772884,
           4772996-4773085,4773990-4774129,4774683-4774814,
           4774916-4775087
          Length = 785

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 563 TKLTSNVDNLLLKHQVHPSH*KY*LIAYGILFIGYFMVR 679
           TKLTS +  + +K  VHP + K+ L     L +  F VR
Sbjct: 502 TKLTSMIREMFVKKNVHPPYLKHLLGKLEALAVDVFTVR 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,849,842
Number of Sequences: 37544
Number of extensions: 373862
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)