Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2355
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   1.3  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   5.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   5.3  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    24   7.0  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    24   7.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    24   9.3  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 118  CLSSATKGSSTLCLLLWQEPTLSNATASKTFLSI 17
            CL +    S+  CL++WQ     +A+ + TFLSI
Sbjct: 958  CLETEDVKSAAECLIIWQIHQ-GSASCASTFLSI 990


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 311 DVFVFHCYFDLIRTESLHVHVHFKFVVICDYLRL 210
           D ++F+ +F + + + L +  H K V + D +RL
Sbjct: 808 DAYIFNRHFVIAKGDQLGLPFHLKGVQVGDTIRL 841


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 8   RNNNAKKRLTSRCVTKCGLLPEQKTQGRGSLRGTRQTCVKHSCLSL 145
           RNN+   + T+  +T+C  LP+ +  G      +  T   ++CL L
Sbjct: 427 RNNSLSFQATAGELTQCKQLPQPRITGNDQ-ENSHYTGAGNNCLEL 471


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 225 ANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLT 362
           +N+ +LE+    K  +PDE +  +K+      GK +    +KK+ T
Sbjct: 264 SNNFQLEIGTEAKSAAPDEPQEIIKS---VSGGKRRGKRKVKKYAT 306


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 335 FLMLSFDRDVFV-FHCYFDLIRTESLHVHVHFKFVVI 228
           FL++  D  + + F+ Y   +  +  HV  +FKF+VI
Sbjct: 89  FLLVYIDAPIMLRFNRYKTYVILQCQHVVANFKFIVI 125


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 88  TLCLLLWQEPTLSNATASKTFLSIVV 11
           T C+LLW   T+    +SK    +V+
Sbjct: 859 TKCILLWNGATIEKDISSKKLTHVVM 884


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,412
Number of Sequences: 5004
Number of extensions: 20471
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)