Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2355
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015           28   2.2  
02_04_0590 - 24154366-24155742                                         28   2.2  
06_02_0225 + 13257655-13260693                                         28   2.9  
10_01_0063 - 827069-827089,827444-829384,830582-830593                 27   5.0  
09_04_0551 - 18488584-18490017                                         27   5.0  
11_06_0078 - 19854185-19856170                                         27   6.6  
10_01_0255 + 2684534-2684601,2684662-2684772,2684853-2684934,268...    26   8.7  

>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
          Length = 327

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/39 (23%), Positives = 25/39 (64%)
 Frame = +3

Query: 219 IIANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKE 335
           ++ +D ++ +  ++   S +E+KV V++  + + G+HK+
Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKK 175


>02_04_0590 - 24154366-24155742
          Length = 458

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 317 DRDVFVFHCYFDLIRTESLHVHVHFKFVVIC 225
           DRD   F    DL+RT  LHV  H    V+C
Sbjct: 61  DRDPECFAVLLDLLRTGGLHVPPHVADGVLC 91


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 380 SLNEMIRQELLYVAGFLMLSFDRDVFVFHC 291
           ++N M+R   +   G  ML+FD D ++++C
Sbjct: 473 AMNAMVRASAILSNGPFMLNFDCDHYIYNC 502


>10_01_0063 - 827069-827089,827444-829384,830582-830593
          Length = 657

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 237 KLEVNMNVKRFSPDEIKVTVKNKYITV 317
           K+++N N+K F+ DEIK    N  I +
Sbjct: 25  KVDINQNIKVFTEDEIKRITSNFSIPI 51


>09_04_0551 - 18488584-18490017
          Length = 477

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 326 LSFDRDVFVFHCYFDLIRTESLHVH 252
           L+FD D F F  YFDL+R    H+H
Sbjct: 79  LAFDDDKF-FTNYFDLVRRYDEHLH 102


>11_06_0078 - 19854185-19856170
          Length = 661

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 237 KLEVNMNVKRFSPDEIKVTVKNKYITVEGK 326
           K+  N NV+ F+ DEIK   KN Y T+ GK
Sbjct: 3   KVHDNNNVRIFTEDEIKRITKN-YRTLIGK 31


>10_01_0255 +
           2684534-2684601,2684662-2684772,2684853-2684934,
           2685004-2685088,2685195-2685358
          Length = 169

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 127 FDTCLSSATKGSSTLCLLLWQEPTLSNATASKTFLS 20
           F TC+      S+T+ + +W   T+  AT  +  LS
Sbjct: 132 FSTCVQIFVVTSATMFVTIWANSTIRRATLQRMTLS 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,402
Number of Sequences: 37544
Number of extensions: 132599
Number of successful extensions: 311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)