Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2354
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   3.0  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   5.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   9.0  

>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 292 MRHPP*DISSKVSSIVTTAAPPFKPKRITASRQNRQSDDTYSCGLTRGP 146
           M H P       S+ V+T+A  + P  +T +++ +  DD       R P
Sbjct: 66  MSHSPGSCMDSESAAVSTSAKCYIPPVLTPAKEPKLGDDVSGIDYIRSP 114


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 490 FPHNNKICAGSDATGIFINCVLFCCSFRFLCV 395
           + +NN  C+     G F+ C     SF F C+
Sbjct: 259 YRYNNDYCSACHGPGNFLCCETCPNSFHFTCI 290


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 265 SKVSSIVTTAAPPFKPKRITASRQNRQSDDTYSCGLTRGPYHQ 137
           S +S +VT +   F+   IT  RQ   +  TY     R P+H+
Sbjct: 567 SVLSPVVTASEGDFELDGITPERQQTMTRSTYQESSQR-PFHE 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,276
Number of Sequences: 5004
Number of extensions: 35892
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)