Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2353
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   1.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   4.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   5.5  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    25   5.5  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   7.3  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   7.3  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   7.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   9.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   9.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   9.6  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    24   9.6  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   9.6  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    24   9.6  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 285 FSRGCLRRWLCSFFTYTGTG*KCSNLID 202
           FS+G ++  +   FTY+G G KC  ++D
Sbjct: 139 FSKGLMKS-MTHLFTYSGMGAKCKKVLD 165


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 125 KYDHQSLFGEFGHHHQIEHEHAKFYQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKLEQN 304
           +YDH  L  E+  HH    EH      +  +H   + + + ++H+ L+        LEQ 
Sbjct: 352 EYDHFLLLVEW--HHDGIVEHVPLDDHMDAQH---LLLLITQKHAQLI--------LEQI 398

Query: 305 LKLIHPETEHKH-GGGL 352
            K +HP    +H GGGL
Sbjct: 399 RKELHPNIFSEHVGGGL 415


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 116 VEAKYDHQSLFGEFGHHHQIEHEHAKFYQSIKFEHFH 226
           ++  +D QSL GEF +  + + E  K   S +F  F+
Sbjct: 431 LDLSFDFQSLMGEFENLIKQQEEAKKSLWSKRFSRFY 467


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 95  IHDEAPQVEAKYDHQSLFGEFGHHHQIEHEHAKFYQS 205
           I +  P+  AKY H++L+ + G ++    +  K YQS
Sbjct: 56  IDENYPRSVAKYLHEALYRQKGENNHDFQDAWKAYQS 92


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 293 LEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAFAGLSTEA 418
           ++QN KL+H     K     VLE   + IEH      LS+ A
Sbjct: 78  VKQNEKLLHSNPTFKISKPTVLEQPLNAIEHLSPETDLSSSA 119


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 227 PVPVYVKKEHSHLLKHPLEKGKLEQNLKLIHPETEHKHGGGLVLEDDRH 373
           P+ ++  K    LL+HP  +  ++        E + KHG  L+LE++ H
Sbjct: 842 PLVIFFSKS---LLRHPAARSTID--------EFDEKHGFKLILEEEEH 879


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 122 AKYDHQSLFGEFGHHHQIEHEHAKFYQSIKFEHFHPV-PVYVKKE 253
           + YD  S  G+F   + ++  H+ + Q ++ E  +P  P Y   E
Sbjct: 34  SNYDMDSFLGQFPSDNNMQLPHSTYEQHLQGEQQNPTNPNYFPPE 78


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 182  EHAKFYQSIKFEHFHPV 232
            +H+K  +S+ +E +HP+
Sbjct: 952  QHSKHLESVVYEEYHPI 968


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 19  SNLATKMKYHIFLGLIAAVTAFPGN 93
           SNL   M Y  F G+ A+V  FP N
Sbjct: 385 SNLYHLMGYSAFTGVAASVILFPCN 409


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 147 NKDWWSYFASTWGASSCIIPRKSSHCGNESQENMVLHL 34
           ++D W      +G      PR++ + G+ES  ++V+ +
Sbjct: 129 SRDVWDLLVRWYGLKGPEFPRETVNLGSESHPHLVVEV 166


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 227 PVPVYVKKEHSHLLKHPLEKGKLEQNLKL 313
           P P+ +KK +S LLK     G   QN KL
Sbjct: 269 PEPLTIKKVYSTLLKIADSNGNGAQNRKL 297


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 69  RSDCFSWE*YMMKLPKSKRNTTTSLC 146
           + DC ++E Y  K  K+  NT  ++C
Sbjct: 13  QDDCITYEEYQRKRKKTFLNTFVNIC 38


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 454 HAPDLVPDPRVQSFRAQTSKSNMVFNVVSVVL 359
           H   +VP  +V +  AQTS +N+  +++S ++
Sbjct: 236 HISLIVPTKKVNTTSAQTSLNNVEHDLISKIM 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,274
Number of Sequences: 5004
Number of extensions: 43347
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)